Rw6G028200

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003569
Physical Location & Seq
Forward (+)
52203050 .. 52204210
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028200.1

Sequence Viewer

Length: 705 bp
ATGCCGAGCACGCTAGGAAGGAACTTAAATCTCTGCTTCACAAAGATCAAACGGCCACTGTTGACTCTCCAATCCCCTCCCGTCGACGATCACCGTTCTTTACCAACAACTACCTCCACCGCCACCGCCTCCGGCTCCACCGCCACGTCATCCTTGACTCTGATAAAAAACTTCAACTCCCTCTACGACGGAGACCACGCCTTCTTCGACTCCGCCACCACCTCCTGCTCCATCAAGTCCTCCGATCTTTCCACCTCCGAAACCGAAAACGACACCGACACCGCCGCCGACTTCGCCACCGTCTTCGCCTCCCAGCGGTTCTTCTTTTCCTCCCCGGGCCGCTCTAACTCCATTGTCGACCAGTCCTCCTCCTCCTCCACGTCGTCTTCCTCGGACCTACACGCGCCCTTCAAGCACAACAGCGTGGCGGTGCCCACGTACTCGCCTGACCCCTACCTCGACTTCCGGCGCTCCATGCAGGAGATGGTAGAGGCGCGCGAGCACCAGACCGAGGACGAGAGCGTGAAGGTCAAATCTAACTGGGAGTTCCTGCATGAGCTGCTCTTGTGTTATCTCGCGCTCAACCCTAAAAGCACTCACAAGTTCATCATCGGCGCATTTTCCGATCTCCTTGTCAGCCTCCTCCCCTCCCCCAAAGATCCCGACTTCACCGCCGGCGTCTGCGAGATTTCCCGGTGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

234

Amino Acids

25.59

Weight (kDa)

5.29

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 148 - 214 6e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 2 cut(s) 84, 357
AccII CGCG 4 cut(s) 404, 496, 498, 578
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 678
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 315, 511
AgsI TTSAA 2 cut(s) 175, 412
AjiI CACGTC 2 cut(s) 147, 381
AluBI AGCT 1 cut(s) 559
AluI AGCT 1 cut(s) 559
Alw21I GWGCWC 2 cut(s) 11, 504
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 53, 337
ApeKI GCWGC 1 cut(s) 559
AspLEI GCGC 6 cut(s) 406, 471, 496, 498, 580, 617
AspS9I GGNCC 2 cut(s) 337, 394
AsuC2I CCSGG 3 cut(s) 335, 336, 694
AsuHPI GGTGA 2 cut(s) 83, 661
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 435
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 295, 378
Bbv12I GWGCWC 2 cut(s) 11, 504
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 239, 478
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 3 cut(s) 335, 336, 694
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 3 cut(s) 285, 340, 560
BlsI GCNGC 3 cut(s) 286, 341, 561
Bme1390I CCNGG 3 cut(s) 335, 336, 694
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 334
BmgBI CACGTC 2 cut(s) 147, 381
BmgT120I GGNCC 2 cut(s) 337, 394
BmiI GGNNCC 2 cut(s) 136, 432
BmrFI CCNGG 3 cut(s) 335, 336, 694
BmrI ACTGGG 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 550
BpiI GAAGAC 2 cut(s) 295, 378
BpuMI CCSGG 3 cut(s) 335, 336, 694
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 678
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 333, 334, 390, 510
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 511
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 361, 545
BseDI CCNNGG 4 cut(s) 333, 334, 390, 510
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 2 cut(s) 315, 511
BseNI ACTGG 2 cut(s) 361, 545
BsePI GCGCGC 1 cut(s) 494
BseRI GAGGAG 4 cut(s) 358, 361, 364, 632
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 312
Bsh1236I CGCG 4 cut(s) 404, 496, 498, 578
BshFI GGCC 2 cut(s) 55, 339
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 2 cut(s) 11, 504
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 5 cut(s) 132, 335, 466, 675, 694
BslI CCNNNNNNNGG 2 cut(s) 315, 511
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 2 cut(s) 55, 339
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 11, 435, 504
Bsp143I GATC 5 cut(s) 45, 88, 244, 625, 658
BspANI GGCC 2 cut(s) 55, 339
BspFNI CGCG 4 cut(s) 404, 496, 498, 578
BspLI GGNNCC 2 cut(s) 136, 432
BspPI GGATC 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 186
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 2 cut(s) 361, 545
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 4 cut(s) 333, 334, 390, 510
BssHII GCGCGC 1 cut(s) 494
BssMI GATC 5 cut(s) 45, 88, 244, 625, 658
BssNI GRCGYC 1 cut(s) 678
Bst4CI ACNGT 3 cut(s) 60, 95, 301
BstACI GRCGYC 1 cut(s) 678
BstAPI GCANNNNNTGC 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 4 cut(s) 11, 496, 500, 676
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 4 cut(s) 404, 496, 498, 578
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 6 cut(s) 406, 471, 496, 498, 580, 617
BstKTI GATC 5 cut(s) 48, 91, 247, 628, 661
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 45, 88, 244, 625, 658
BstMWI GCNNNNNNNGC 5 cut(s) 10, 293, 412, 475, 559
BstSCI CCNGG 3 cut(s) 333, 334, 692
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 4 cut(s) 404, 496, 498, 578
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 2 cut(s) 295, 378
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuRI GGCC 2 cut(s) 55, 339
BtrI CACGTC 2 cut(s) 147, 381
BtsCI GGATG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 4 cut(s) 11, 496, 500, 676
CfoI GCGC 6 cut(s) 406, 471, 496, 498, 580, 617
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 2 cut(s) 337, 394
Cfr9I CCCGGG 1 cut(s) 334
CseI GACGC 1 cut(s) 667
Csp6I GTAC 1 cut(s) 439
CviAII CATG 2 cut(s) 475, 554
CviJI RGCY 5 cut(s) 55, 135, 339, 559, 639
CviKI_1 RGCY 5 cut(s) 55, 135, 339, 559, 639
CviQI GTAC 1 cut(s) 439
DpnI GATC 5 cut(s) 47, 90, 246, 627, 660
DpnII GATC 5 cut(s) 45, 88, 244, 625, 658
EaeI YGGCCR 1 cut(s) 53
EciI GGCGGA 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 334
FaeI CATG 2 cut(s) 478, 557
FaiI YATR 2 cut(s) 476, 555
FatI CATG 2 cut(s) 474, 553
FblI GTMKAC 2 cut(s) 84, 357
Fnu4HI GCNGC 3 cut(s) 285, 340, 560
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 285, 340, 560
FspBI CTAG 1 cut(s) 14
GlaI GCGC 6 cut(s) 405, 470, 495, 497, 579, 616
GluI GCNGC 3 cut(s) 285, 340, 560
GsaI CCCAGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 2 cut(s) 55, 339
HapII CCGG 5 cut(s) 132, 335, 466, 675, 694
HgaI GACGC 1 cut(s) 667
HhaI GCGC 6 cut(s) 406, 471, 496, 498, 580, 617
Hin1I GRCGYC 1 cut(s) 678
Hin1II CATG 2 cut(s) 478, 557
Hin6I GCGC 6 cut(s) 404, 469, 494, 496, 578, 615
HinP1I GCGC 6 cut(s) 404, 469, 494, 496, 578, 615
HincII GTYRAC 3 cut(s) 63, 85, 358
HindII GTYRAC 3 cut(s) 63, 85, 358
HinfI GANTC 3 cut(s) 64, 157, 209
HpaII CCGG 5 cut(s) 132, 335, 466, 675, 694
HphI GGTGA 2 cut(s) 83, 661
Hpy166II GTNNAC 3 cut(s) 63, 85, 358
Hpy188I TCNGA 5 cut(s) 162, 244, 259, 394, 625
Hpy188III TCNNGA 1 cut(s) 662
Hpy8I GTNNAC 3 cut(s) 63, 85, 358
Hpy99I CGWCG 4 cut(s) 86, 89, 191, 385
HpyAV CCTTC 4 cut(s) 12, 211, 418, 520
HpyCH4III ACNGT 3 cut(s) 60, 95, 301
HpyCH4IV ACGT 3 cut(s) 146, 380, 437
HpyCH4V TGCA 3 cut(s) 478, 553, 699
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 293, 412, 475, 559
HpySE526I ACGT 3 cut(s) 146, 380, 437
Hsp92I GRCGYC 1 cut(s) 678
Hsp92II CATG 2 cut(s) 478, 557
HspAI GCGC 6 cut(s) 404, 469, 494, 496, 578, 615
KroI GCCGGC 1 cut(s) 674
KroNI GCCGGC 1 cut(s) 676
Kzo9I GATC 5 cut(s) 45, 88, 244, 625, 658
LmnI GCTCC 3 cut(s) 140, 233, 476
Lsp1109I GCAGC 1 cut(s) 546
MaeI CTAG 1 cut(s) 14
MaeII ACGT 3 cut(s) 146, 380, 437
MalI GATC 5 cut(s) 47, 90, 246, 627, 660
MbiI CCGCTC 1 cut(s) 342
MboI GATC 5 cut(s) 45, 88, 244, 625, 658
MboII GAAGA 4 cut(s) 196, 295, 313, 378
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 3 cut(s) 11, 435, 504
MlyI GAGTC 3 cut(s) 58, 151, 203
MreI CGCCGGCG 1 cut(s) 674
MroNI GCCGGC 1 cut(s) 674
MseI TTAA 2 cut(s) 26, 703
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 5 cut(s) 132, 335, 466, 675, 694
MspR9I CCNGG 3 cut(s) 335, 336, 694
MvnI CGCG 4 cut(s) 404, 496, 498, 578
MwoI GCNNNNNNNGC 5 cut(s) 10, 293, 412, 475, 559
NaeI GCCGGC 1 cut(s) 676
NciI CCSGG 3 cut(s) 335, 336, 694
NdeII GATC 5 cut(s) 45, 88, 244, 625, 658
NgoMIV GCCGGC 1 cut(s) 674
NlaIII CATG 2 cut(s) 478, 557
NlaIV GGNNCC 2 cut(s) 136, 432
NmeAIII GCCGAG 1 cut(s) 30
PauI GCGCGC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 676
PkrI GCNGC 3 cut(s) 286, 341, 561
PleI GAGTC 3 cut(s) 58, 151, 203
PpsI GAGTC 3 cut(s) 58, 151, 203
Ppu21I YACGTR 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 136, 432
PspPI GGNCC 2 cut(s) 337, 394
PsuI RGATCY 1 cut(s) 658
PteI GCGCGC 1 cut(s) 494
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SalI GTCGAC 2 cut(s) 83, 356
SaqAI TTAA 2 cut(s) 26, 703
SatI GCNGC 3 cut(s) 285, 340, 560
Sau3AI GATC 5 cut(s) 45, 88, 244, 625, 658
Sau96I GGNCC 2 cut(s) 337, 394
SchI GAGTC 3 cut(s) 58, 151, 203
ScrFI CCNGG 3 cut(s) 335, 336, 694
SduI GDGCHC 3 cut(s) 11, 435, 504
SgrAI CRCCGGYG 1 cut(s) 674
SgrDI CGTCGACG 1 cut(s) 83
SinI GGWCC 1 cut(s) 394
SmaI CCCGGG 1 cut(s) 336
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 333, 334, 692
TaaI ACNGT 3 cut(s) 60, 95, 301
TaiI ACGT 3 cut(s) 149, 383, 440
TaqI TCGA 4 cut(s) 84, 207, 357, 459
TaqII GACCGA 1 cut(s) 524
TauI GCSGC 2 cut(s) 287, 342
Tru1I TTAA 2 cut(s) 26, 703
Tru9I TTAA 2 cut(s) 26, 703
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 1 cut(s) 595
TspGWI ACGGA 1 cut(s) 204
TspMI CCCGGG 1 cut(s) 334
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmaI CCCGGG 1 cut(s) 334
XmiI GTMKAC 2 cut(s) 84, 357
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.