Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

13647699 .. 13649002

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCAAAAATCTTGTGGAAAAGCCTCCATCTTTGCTTCCCGTCAAATCTCACCAAATGCTATTCTTCGCCGTGTATTCCTCCGTCCTCCGCCGATCCCGACGGTATCATCCAACCTAACCGTCCCTCCATCGTTCTTCTCAATAACTTCAACCTCCTTTACCACAATGACAACCACCACCACCCCCATCGTGTCATTGACTTACCTTCTTCCTCCACCACAACCACTCCGGCCGCCACCTCCTCCTCATCCACGTCATCATATGAATCTGATATCTCTCCTGATGTATCCGCCGCTTTTGCTTCCCGTCGCTTCTTCTTCTCTTCCCCTGGTCGGTCCAATGCAATCACCGACTCACCAGAACCCCGGTCAAGAGAATTCTCTGATAATTACGATGATGCCACTATCACGTCGACAAAGAAGAAGAAAAAGAAGGTTTATGATAATTCCGTGACTACTACTACTACGAGGCTTATAAGCGGAGGAACCGCCGTAACTCAACACGTGGACTCACCGGATCCGTTAACTGACTTCCGGCGATCCATGCAAGAGATGATTGACGCCGCCATCGACGCCGGAGAACTTAGTCGTGATCCGAACGACGGTTACGATTTCTTGGATGAACTGCTACTCACTTATCTCTCTTTAAATCCAGCCGACACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCGGAAGAACGCCGGATATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

244

Amino Acids

27.06

Weight (kDa)

5.72

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	171 - 236	8.9e-19	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AasI	GACNNNNNNGTC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	7 cut(s)	90, 234, 291, 294, 480, 489, 564
AclWI	GGATC	5 cut(s)	89, 512, 525, 534, 587
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	505
AcyI	GRCGYC	2 cut(s)	561, 573
AfiI	CCNNNNNNNGG	2 cut(s)	333, 602
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	2 cut(s)	255, 411
AjnI	CCWGG	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	5 cut(s)	89, 512, 525, 534, 587
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	4 cut(s)	43, 340, 348, 504
AvaII	GGWCC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	505
BccI	CCATC	4 cut(s)	36, 137, 195, 575
BceAI	ACGGC	2 cut(s)	55, 476
BciT130I	CCWGG	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	234, 294, 564
BlsI	GCNGC	3 cut(s)	235, 295, 565
Bme1390I	CCNGG	2 cut(s)	330, 367
Bme18I	GGWCC	1 cut(s)	336
BmgBI	CACGTC	2 cut(s)	255, 411
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	487, 519
BmrFI	CCNGG	2 cut(s)	330, 367
BmsI	GCATC	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	505
BsaHI	GRCGYC	2 cut(s)	561, 573
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	2 cut(s)	328, 365
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 211, 241
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 602
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	328, 365
BseGI	GGATG	3 cut(s)	108, 248, 625
BseLI	CCNNNNNNNGG	2 cut(s)	333, 602
BseRI	GAGGAG	2 cut(s)	232, 235
BseX3I	CGGCCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	6 cut(s)	230, 367, 515, 535, 576, 724
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	333, 602
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	706
Bsp143I	GATC	4 cut(s)	94, 517, 539, 592
BspACI	CCGC	7 cut(s)	90, 234, 291, 294, 480, 489, 564
BspANI	GGCC	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	487, 519
BspPI	GGATC	5 cut(s)	89, 512, 525, 534, 587
BspTNI	GGTCTC	1 cut(s)	706
BssECI	CCNNGG	2 cut(s)	328, 365
BssMI	GATC	4 cut(s)	94, 517, 539, 592
BssNI	GRCGYC	2 cut(s)	561, 573
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	104, 122, 605
Bst6I	CTCTTC	1 cut(s)	328
BstACI	GRCGYC	2 cut(s)	561, 573
BstBAI	YACGTR	1 cut(s)	505
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	108, 248, 625
BstKTI	GATC	4 cut(s)	97, 520, 542, 595
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	4 cut(s)	94, 517, 539, 592
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 544, 572, 729
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	328, 365
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BstZI	CGGCCG	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	233
BtrI	CACGTC	2 cut(s)	255, 411
BtsCI	GGATG	3 cut(s)	108, 248, 625
Cfr13I	GGNCC	1 cut(s)	336
CseI	GACGC	2 cut(s)	569, 581
CviAII	CATG	1 cut(s)	544
CviJI	RGCY	5 cut(s)	24, 233, 472, 656, 683
CviKI_1	RGCY	5 cut(s)	24, 233, 472, 656, 683
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	4 cut(s)	96, 519, 541, 594
DpnII	GATC	4 cut(s)	94, 517, 539, 592
DraI	TTTAAA	1 cut(s)	648
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	231
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	2 cut(s)	79, 280
EclXI	CGGCCG	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	336
Eco52I	CGGCCG	1 cut(s)	231
Eco72I	CACGTG	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	274
FaeI	CATG	1 cut(s)	547
FaiI	YATR	7 cut(s)	262, 264, 441, 476, 545, 695, 730
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	543
FauNDI	CATATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	3 cut(s)	234, 294, 564
FokI	GGATG	3 cut(s)	95, 235, 632
Fsp4HI	GCNGC	3 cut(s)	234, 294, 564
GluI	GCNGC	3 cut(s)	234, 294, 564
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	6 cut(s)	230, 367, 515, 535, 576, 724
HgaI	GACGC	2 cut(s)	569, 581
Hin1I	GRCGYC	2 cut(s)	561, 573
Hin1II	CATG	1 cut(s)	547
HincII	GTYRAC	2 cut(s)	414, 525
HindII	GTYRAC	2 cut(s)	414, 525
HinfI	GANTC	3 cut(s)	266, 353, 509
HpaI	GTTAAC	1 cut(s)	525
HpaII	CCGG	6 cut(s)	230, 367, 515, 535, 576, 724
HphI	GGTGA	4 cut(s)	43, 340, 348, 504
Hpy166II	GTNNAC	3 cut(s)	414, 508, 525
Hpy188I	TCNGA	5 cut(s)	271, 385, 597, 691, 715
Hpy188III	TCNNGA	4 cut(s)	98, 281, 372, 590
Hpy8I	GTNNAC	3 cut(s)	414, 508, 525
Hpy99I	CGWCG	5 cut(s)	104, 312, 415, 575, 605
HpyAV	CCTTC	2 cut(s)	216, 427
HpyCH4III	ACNGT	3 cut(s)	104, 122, 605
HpyCH4IV	ACGT	3 cut(s)	254, 410, 504
HpyCH4V	TGCA	2 cut(s)	344, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 544, 572, 729
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	3 cut(s)	254, 410, 504
Hsp92I	GRCGYC	2 cut(s)	561, 573
Hsp92II	CATG	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	94, 517, 539, 592
LweI	GCATC	1 cut(s)	388
MaeII	ACGT	3 cut(s)	254, 410, 504
MaeIII	GTNAC	3 cut(s)	451, 493, 605
MalI	GATC	4 cut(s)	96, 519, 541, 594
MboI	GATC	4 cut(s)	94, 517, 539, 592
MboII	GAAGA	9 cut(s)	57, 128, 201, 307, 310, 315, 433, 436, 728
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	3 cut(s)	377, 388, 445
MlyI	GAGTC	2 cut(s)	347, 503
MmeI	TCCRAC	3 cut(s)	136, 693, 714
MseI	TTAA	2 cut(s)	524, 647
MspI	CCGG	6 cut(s)	230, 367, 515, 535, 576, 724
MspR9I	CCNGG	2 cut(s)	330, 367
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	299, 544, 572, 729
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	4 cut(s)	94, 517, 539, 592
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	2 cut(s)	487, 519
NmuCI	GTSAC	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 606
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	235, 295, 565
PleI	GAGTC	2 cut(s)	347, 503
PmaCI	CACGTG	1 cut(s)	505
PmlI	CACGTG	1 cut(s)	505
PpsI	GAGTC	2 cut(s)	347, 503
Ppu21I	YACGTR	1 cut(s)	505
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	487, 519
PspPI	GGNCC	1 cut(s)	336
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
PsuI	RGATCY	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	524, 647
SatI	GCNGC	3 cut(s)	234, 294, 564
Sau3AI	GATC	4 cut(s)	94, 517, 539, 592
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	2 cut(s)	347, 503
ScrFI	CCNGG	2 cut(s)	330, 367
SetI	ASST	8 cut(s)	118, 156, 208, 242, 257, 413, 438, 507
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	1 cut(s)	336
Sse9I	AATT	3 cut(s)	377, 388, 445
SsiI	CCGC	7 cut(s)	90, 234, 291, 294, 480, 489, 564
StyD4I	CCNGG	2 cut(s)	328, 365
TaaI	ACNGT	3 cut(s)	104, 122, 605
TaiI	ACGT	3 cut(s)	257, 413, 507
TaqI	TCGA	2 cut(s)	413, 570
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	377, 388, 445
TauI	GCSGC	3 cut(s)	236, 296, 566
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	524, 647
Tru9I	TTAA	2 cut(s)	524, 647
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	279, 636
TspGWI	ACGGA	3 cut(s)	72, 439, 510
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.