Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Reverse (-)

12349457 .. 12350212

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCAAAAATCATAGGCAAGAGCTTCCCCCTCTGCTTCCCCAATTTCATCAAATGCCTACCTACAATCCAAGCTCCGCCAGATCACGCCTCAAACGAATTAGACCACGAAAACCAGCCACCACGTTGCTCCACCACCAACACCTCATGTACATCGCTGATCATCAAGAACTTCAACTCCCTCTATAATGACTTCAACTTGATCAACTCATCATCAGACAACTCAACCTCCAAATCCCCCACAGCCTCCTCCTCCGCCGATGATGATCATTTCTACTCCTCCTCCGACTCAGACTCTGACCAGTACTCCCCTCCCGACTTTGCCACCATCTTCGCCTCTCAACGATTCTTCTTCTCCTCCCCGGGACAATCCAACTCCATCGTCGAGTCTCCAGACACCACCACAAAACCCAAGTCGTCTCAGAAAAGAATGTTGGTCACCAAAGGCGTGCGCGTTTCCAAGTATTCCTCAAACCCTTACATGGATTTTCGGCTTTCAATGGAGGAAATGCTCGAAGCGAGTCGAGATCATATATCGGCAGGTGAATCAGGTGATCATGTTCATCATAGTACAAGCGATGACATGGAGTATTTACATGAGCTTCTCTTTTGCTACCTTTCGCTCAATCCGAAACACGCCCACAAGGACATTATCAATGCCTTCACCGACCTTCTCATCTGCCTACTGTGTGCTGAAGATTCATCACCACCAGCTTTGGTGGCCGATGACCGTCAAGAACAACCAGAAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

252

Amino Acids

27.92

Weight (kDa)

4.99

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	156 - 228	3.9e-17	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	77, 255
AcoI	YGGCCR	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	3 cut(s)	151, 305, 571
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	175, 196, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	4 cut(s)	24, 74, 601, 713
AluI	AGCT	4 cut(s)	24, 74, 601, 713
Alw26I	GTCTC	2 cut(s)	393, 423
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	720
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AspLEI	GCGC	1 cut(s)	453
AsuC2I	CCSGG	2 cut(s)	362, 363
AsuHPI	GGTGA	5 cut(s)	430, 554, 563, 655, 696
AvaI	CYCGRG	1 cut(s)	361
BccI	CCATC	2 cut(s)	335, 386
BclI	TGATCA	4 cut(s)	159, 201, 265, 553
BcnI	CCSGG	2 cut(s)	362, 363
BcoDI	GTCTC	2 cut(s)	393, 423
BfuAI	ACCTGC	1 cut(s)	530
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	362, 363
BmeT110I	CYCGRG	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	362, 363
BpmI	CTGGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	362, 363
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	360, 361
BsaXI	ACNNNNNCTCC	8 cut(s)	161, 191, 212, 242, 266, 290, 296, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	360, 361
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	303, 434
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	5 cut(s)	238, 241, 268, 271, 346
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	722
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	393, 423
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
BspACI	CCGC	2 cut(s)	77, 255
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	2 cut(s)	302, 433
BspFNI	CGCG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	360, 361
BssMI	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
Bst4CI	ACNGT	2 cut(s)	687, 731
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	289, 420
BstEII	GGTNACC	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	6 cut(s)	85, 162, 204, 268, 529, 556
BstMAI	GTCTC	2 cut(s)	393, 423
BstMBI	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	360, 361
BstUI	CGCG	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	722
BtgZI	GCGATG	2 cut(s)	138, 591
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	453
Cfr9I	CCCGGG	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	150, 304, 570
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviAII	CATG	5 cut(s)	147, 481, 557, 583, 596
CviJI	RGCY	8 cut(s)	24, 74, 118, 245, 493, 601, 713, 722
CviKI_1	RGCY	8 cut(s)	24, 74, 118, 245, 493, 601, 713, 722
CviQI	GTAC	3 cut(s)	150, 304, 570
DdeI	CTNAG	2 cut(s)	289, 420
DpnI	GATC	6 cut(s)	84, 161, 203, 267, 528, 555
DpnII	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
EaeI	YGGCCR	1 cut(s)	720
EciI	GGCGGA	2 cut(s)	66, 244
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	5 cut(s)	150, 484, 560, 586, 599
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	5 cut(s)	146, 480, 556, 582, 595
FbaI	TGATCA	4 cut(s)	159, 201, 265, 553
GlaI	GCGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	150, 484, 560, 586, 599
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HinfI	GANTC	7 cut(s)	287, 293, 345, 386, 520, 545, 698
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	5 cut(s)	430, 554, 563, 655, 696
Hpy188I	TCNGA	6 cut(s)	217, 286, 292, 298, 423, 630
Hpy188III	TCNNGA	5 cut(s)	166, 314, 392, 524, 734
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	670, 680
HpyCH4III	ACNGT	2 cut(s)	687, 731
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	2 cut(s)	289, 420
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	150, 484, 560, 586, 599
HspAI	GCGC	1 cut(s)	451
Ksp22I	TGATCA	4 cut(s)	159, 201, 265, 553
Kzo9I	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
LmnI	GCTCC	2 cut(s)	79, 134
LpnPI	CCDG	8 cut(s)	93, 128, 314, 375, 405, 525, 534, 723
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	6 cut(s)	84, 161, 203, 267, 528, 555
MboI	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
MboII	GAAGA	4 cut(s)	322, 340, 343, 707
MluCI	AATT	2 cut(s)	43, 98
MlyI	GAGTC	4 cut(s)	281, 287, 395, 529
MmeI	TCCRAC	2 cut(s)	309, 396
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	362, 363
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	362, 363
NdeII	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
NlaIII	CATG	5 cut(s)	150, 484, 560, 586, 599
NmuCI	GTSAC	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 626
PfeI	GAWTC	3 cut(s)	345, 545, 698
PleI	GAGTC	4 cut(s)	281, 287, 394, 528
PpsI	GAGTC	4 cut(s)	281, 287, 394, 528
PspEI	GGTNACC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	296
RsaI	GTAC	3 cut(s)	151, 305, 571
RsaNI	GTAC	3 cut(s)	150, 304, 570
Sau3AI	GATC	6 cut(s)	82, 159, 201, 265, 526, 553
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	4 cut(s)	281, 287, 395, 529
ScrFI	CCNGG	2 cut(s)	362, 363
SmaI	CCCGGG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	43, 98
SsiI	CCGC	2 cut(s)	77, 255
StyD4I	CCNGG	2 cut(s)	360, 361
TaaI	ACNGT	2 cut(s)	687, 731
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	384, 513, 523
TasI	AATT	2 cut(s)	43, 98
TatI	WGTACW	3 cut(s)	149, 303, 569
TfiI	GAWTC	3 cut(s)	345, 545, 698
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	37, 551, 690
TspMI	CCCGGG	1 cut(s)	361
XmaI	CCCGGG	1 cut(s)	361
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.