Rh6DG325600

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003569
Physical Location & Seq
Forward (+)
52979266 .. 52980962
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG325600.1

Sequence Viewer

Length: 720 bp
ATGCCGAGCACGCTAGGAAGGAACTTAAATCTCTGCTTCACAAAGATCAAACGGCCACTGTTGACTCTCCAATCCCCTCCTGTCGACGATCACCGTTCTTTACCAACAACCACCTCCACCGCCACCGCCACCGCAACCGCCTCCGCCTCCACCGCCACGTCATCCTCGACTCTGATAAAAAACTTCAACTCCCTCTACGACGGAGACCACGCCTTCTTCGACTCCGCCACCACCTCATGCTCCATCAAGTCCTCCGATCTTTCCACCTCCGAAACCGAAAACGACACCGACACCGCCGCCGCCGACTTCGCCACCGTCTTCGCCTCCCAGCGGTTCTTCTTTTCCTCCCCCGGCCGCTCTAACTCCATTGTCGACCAGTCCTCCTCCTCCGCCACGTCGTCTTCCTCGGACCTCCACGCGCCCTTCAAGCACAACAGCGTGGCGGTGCCCACGTACTCGCCTGACCCCTACCTCGACTTCCGGCGCTCCATGCAGGAGATGGTGGAGGCGCGAGAGCACCAGACCGAGGACGAGAGCGTGAAGGTCAAATCTAACTGGGAGTTCCTGCATGAGCTGCTCTTGTGTTATCTCGCGCTCAACCCTAAGAGCACTCACAAGTTCATCATCGGCGCATTTTCCGATCTCCTCGTCAGCCTCCTCCCCTCCCCCAAAGATCCCGACTTCACCGCCGGCGTCTGCGAGATTTCCCGGTGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

239

Amino Acids

25.97

Weight (kDa)

5.29

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 153 - 219 6.3e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccBSI CCGCTC 1 cut(s) 357
AccI GTMKAC 2 cut(s) 84, 372
AccII CGCG 3 cut(s) 419, 511, 593
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 2 cut(s) 53, 352
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 330, 526
AgsI TTSAA 2 cut(s) 187, 427
AjiI CACGTC 2 cut(s) 159, 396
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw21I GWGCWC 3 cut(s) 11, 519, 611
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 668
AoxI GGCC 2 cut(s) 53, 352
ApeKI GCWGC 1 cut(s) 574
AspLEI GCGC 5 cut(s) 421, 486, 511, 595, 632
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 2 cut(s) 351, 709
AsuHPI GGTGA 2 cut(s) 83, 676
AvaII GGWCC 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 310, 393
Bbv12I GWGCWC 3 cut(s) 11, 519, 611
BbvI GCAGC 1 cut(s) 561
BccI CCATC 2 cut(s) 251, 493
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 2 cut(s) 351, 709
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 487
BisI GCNGC 4 cut(s) 297, 300, 355, 575
BlsI GCNGC 4 cut(s) 298, 301, 356, 576
Bme1390I CCNGG 2 cut(s) 351, 709
Bme18I GGWCC 1 cut(s) 409
BmgBI CACGTC 2 cut(s) 159, 396
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 351, 709
BmrI ACTGGG 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 565
BpiI GAAGAC 2 cut(s) 310, 393
BpuMI CCSGG 2 cut(s) 351, 709
BsaAI YACGTR 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 349, 405, 525
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 365, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 526
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 376, 560
BseDI CCNNGG 3 cut(s) 349, 405, 525
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 330, 526
BseNI ACTGG 2 cut(s) 376, 560
BseRI GAGGAG 4 cut(s) 373, 376, 635, 647
BseSI GKGCMC 1 cut(s) 450
BseX3I CGGCCG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 561
BseYI CCCAGC 1 cut(s) 327
Bsh1236I CGCG 3 cut(s) 419, 511, 593
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 55, 354
BshNI GGYRCC 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 355
BsiHKAI GWGCWC 3 cut(s) 11, 519, 611
BsiSI CCGG 4 cut(s) 351, 481, 690, 709
BslI CCNNNNNNNGG 2 cut(s) 330, 526
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 55, 354
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 4 cut(s) 11, 450, 519, 611
Bsp143I GATC 5 cut(s) 45, 88, 256, 640, 673
BspANI GGCC 2 cut(s) 55, 354
BspFNI CGCG 3 cut(s) 419, 511, 593
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 198
BsrBI CCGCTC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 2 cut(s) 376, 560
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 349, 405, 525
BssMI GATC 5 cut(s) 45, 88, 256, 640, 673
BssNI GRCGYC 1 cut(s) 693
Bst4CI ACNGT 3 cut(s) 60, 95, 316
BstACI GRCGYC 1 cut(s) 693
BstAPI GCANNNNNTGC 1 cut(s) 574
BstBAI YACGTR 1 cut(s) 453
BstC8I GCNNGC 2 cut(s) 11, 691
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 161
BstFNI CGCG 3 cut(s) 419, 511, 593
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 5 cut(s) 421, 486, 511, 595, 632
BstKTI GATC 5 cut(s) 48, 91, 259, 643, 676
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 5 cut(s) 45, 88, 256, 640, 673
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 6 cut(s) 10, 152, 308, 427, 490, 574
BstSCI CCNGG 2 cut(s) 349, 707
BstSLI GKGCMC 1 cut(s) 450
BstUI CGCG 3 cut(s) 419, 511, 593
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 2 cut(s) 310, 393
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 55, 354
BtrI CACGTC 2 cut(s) 159, 396
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 11, 691
CfoI GCGC 5 cut(s) 421, 486, 511, 595, 632
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 454
CviAII CATG 3 cut(s) 237, 490, 569
CviJI RGCY 4 cut(s) 55, 354, 574, 654
CviKI_1 RGCY 4 cut(s) 55, 354, 574, 654
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 603
DpnI GATC 5 cut(s) 47, 90, 258, 642, 675
DpnII GATC 5 cut(s) 45, 88, 256, 640, 673
EaeI YGGCCR 2 cut(s) 53, 352
EagI CGGCCG 1 cut(s) 352
EciI GGCGGA 3 cut(s) 133, 214, 379
EclXI CGGCCG 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 352
FaeI CATG 3 cut(s) 240, 493, 572
FaiI YATR 3 cut(s) 238, 491, 570
FatI CATG 3 cut(s) 236, 489, 568
FblI GTMKAC 2 cut(s) 84, 372
Fnu4HI GCNGC 4 cut(s) 297, 300, 355, 575
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 297, 300, 355, 575
FspBI CTAG 1 cut(s) 14
GlaI GCGC 5 cut(s) 420, 485, 510, 594, 631
GluI GCNGC 4 cut(s) 297, 300, 355, 575
GsaI CCCAGC 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 2 cut(s) 55, 354
HapII CCGG 4 cut(s) 351, 481, 690, 709
HgaI GACGC 1 cut(s) 682
HhaI GCGC 5 cut(s) 421, 486, 511, 595, 632
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 3 cut(s) 240, 493, 572
Hin6I GCGC 5 cut(s) 419, 484, 509, 593, 630
HinP1I GCGC 5 cut(s) 419, 484, 509, 593, 630
HincII GTYRAC 3 cut(s) 63, 85, 373
HindII GTYRAC 3 cut(s) 63, 85, 373
HinfI GANTC 3 cut(s) 64, 169, 221
HpaII CCGG 4 cut(s) 351, 481, 690, 709
HphI GGTGA 2 cut(s) 83, 676
Hpy166II GTNNAC 3 cut(s) 63, 85, 373
Hpy188I TCNGA 5 cut(s) 174, 256, 271, 409, 640
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 3 cut(s) 63, 85, 373
Hpy99I CGWCG 3 cut(s) 89, 203, 400
HpyAV CCTTC 4 cut(s) 12, 223, 433, 535
HpyCH4III ACNGT 3 cut(s) 60, 95, 316
HpyCH4IV ACGT 3 cut(s) 158, 395, 452
HpyCH4V TGCA 3 cut(s) 493, 568, 714
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 152, 308, 427, 490, 574
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 3 cut(s) 158, 395, 452
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 3 cut(s) 240, 493, 572
HspAI GCGC 5 cut(s) 419, 484, 509, 593, 630
KroI GCCGGC 1 cut(s) 689
KroNI GCCGGC 1 cut(s) 691
Kzo9I GATC 5 cut(s) 45, 88, 256, 640, 673
LmnI GCTCC 2 cut(s) 245, 491
Lsp1109I GCAGC 1 cut(s) 561
MaeI CTAG 1 cut(s) 14
MaeII ACGT 3 cut(s) 158, 395, 452
MalI GATC 5 cut(s) 47, 90, 258, 642, 675
MbiI CCGCTC 1 cut(s) 357
MboI GATC 5 cut(s) 45, 88, 256, 640, 673
MboII GAAGA 4 cut(s) 208, 310, 328, 393
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 4 cut(s) 11, 450, 519, 611
MlyI GAGTC 3 cut(s) 58, 163, 215
MreI CGCCGGCG 1 cut(s) 689
MroNI GCCGGC 1 cut(s) 689
MseI TTAA 2 cut(s) 26, 718
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 4 cut(s) 351, 481, 690, 709
MspR9I CCNGG 2 cut(s) 351, 709
MvnI CGCG 3 cut(s) 419, 511, 593
MwoI GCNNNNNNNGC 6 cut(s) 10, 152, 308, 427, 490, 574
NaeI GCCGGC 1 cut(s) 691
NciI CCSGG 2 cut(s) 351, 709
NdeII GATC 5 cut(s) 45, 88, 256, 640, 673
NgoMIV GCCGGC 1 cut(s) 689
NlaIII CATG 3 cut(s) 240, 493, 572
NlaIV GGNNCC 1 cut(s) 447
NmeAIII GCCGAG 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 164, 216
PdiI GCCGGC 1 cut(s) 691
PkrI GCNGC 4 cut(s) 298, 301, 356, 576
PleI GAGTC 3 cut(s) 58, 163, 215
PpsI GAGTC 3 cut(s) 58, 163, 215
Ppu21I YACGTR 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 409
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SalI GTCGAC 2 cut(s) 83, 371
SaqAI TTAA 2 cut(s) 26, 718
SatI GCNGC 4 cut(s) 297, 300, 355, 575
Sau3AI GATC 5 cut(s) 45, 88, 256, 640, 673
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 3 cut(s) 58, 163, 215
ScrFI CCNGG 2 cut(s) 351, 709
SduI GDGCHC 4 cut(s) 11, 450, 519, 611
SgrAI CRCCGGYG 1 cut(s) 689
SinI GGWCC 1 cut(s) 409
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 349, 707
TaaI ACNGT 3 cut(s) 60, 95, 316
TaiI ACGT 3 cut(s) 161, 398, 455
TaqI TCGA 5 cut(s) 84, 167, 219, 372, 474
TaqII GACCGA 1 cut(s) 539
TauI GCSGC 3 cut(s) 299, 302, 357
Tru1I TTAA 2 cut(s) 26, 718
Tru9I TTAA 2 cut(s) 26, 718
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 574
TspDTI ATGAA 1 cut(s) 610
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 2 cut(s) 84, 372
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.