Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

38733291 .. 38734010

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG198600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCCAAACTCCCATGGAAGAAGAATCTTCACCTCTGGCTCCCCAATTTCAAATGCCTACCCCTAATCACCCAAACCCCACCTCAACCCTCCGACCAAGACCACCTTCACCCACACCCACAACTCATGATCATCAACAACTTCAACACCCTCTATCACGACTCCAACTCTTCAGATCAATCCACCTCCAAATCCCTCACCGCCTCCGACGACTTCTTCTACTCTTCCTCCTCCGATTCCGAAGCCGCCCCTGACTCCCCGCCTGACTTCGCCACCGTCTTTGCCTCCCAACGCTTCTTCTTCTCCTCACCCGGCCGCTCCAACTCCATCGTCGAGTCGCCGGACACCAAACCCAACAACAACGATTCCTTCGTTACCAGAGGCGTTACTGTTGCCAAGTACTCCTCAAATCCTCACTTGGATTTCAGAAATTCCATGAAGGAAATGCTCGAAGCTAGAGATAGAGATCATATAGACAATAAAAATAGAGATCATAATGTGGTGGATGTGTTGAAAAGCGACTTGGATTATCTACACGAGCTGCTCTTGTGCTACCTTAAGTTAAATCCCGAAGACGCCCACAAGGACATTATCAGTGCCTTCACCGACCTTGTCATTTGCATATTGTCTGCTAATCCGGCAGCTTCAACATCAACGTCGGCCGATGACGATCACAGGCTAGAAGAGGAGGAGGAGATTCAGCGGCAACGTCCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

239

Amino Acids

27.09

Weight (kDa)

5.08

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	135 - 207	1.9e-15	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	5 cut(s)	201, 246, 260, 316, 703
AcoI	YGGCCR	2 cut(s)	313, 660
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	401
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	52, 145, 514, 648
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 506, 538
AluBI	AGCT	3 cut(s)	455, 541, 644
AluI	AGCT	3 cut(s)	455, 541, 644
AoxI	GGCC	2 cut(s)	313, 660
ApeKI	GCWGC	2 cut(s)	541, 641
ApoI	RAATTY	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	6 cut(s)	23, 61, 101, 190, 300, 595
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	528, 653
BccI	CCATC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	2 cut(s)	456, 680
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	5 cut(s)	246, 316, 542, 642, 704
BlsI	GCNGC	5 cut(s)	247, 317, 543, 643, 705
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	312
BsaBI	GATNNNNATC	2 cut(s)	465, 669
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse8I	GATNNNNATC	2 cut(s)	465, 669
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	2 cut(s)	465, 669
BseRI	GAGGAG	6 cut(s)	220, 295, 394, 701, 704, 707
BseX3I	CGGCCG	2 cut(s)	313, 660
BseXI	GCAGC	2 cut(s)	528, 653
Bsh1285I	CGRYCG	2 cut(s)	316, 663
BshFI	GGCC	2 cut(s)	315, 662
BsiEI	CGRYCG	2 cut(s)	316, 663
BsiSI	CCGG	3 cut(s)	312, 341, 638
BsnI	GGCC	2 cut(s)	315, 662
Bsp143I	GATC	5 cut(s)	129, 175, 466, 490, 670
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	5 cut(s)	201, 246, 260, 316, 703
BspANI	GGCC	2 cut(s)	315, 662
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	5 cut(s)	129, 175, 466, 490, 670
BssNI	GRCGYC	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	277, 391
Bst6I	CTCTTC	3 cut(s)	175, 229, 678
BstACI	GRCGYC	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	557
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	5 cut(s)	132, 178, 469, 493, 673
BstMBI	GATC	5 cut(s)	129, 175, 466, 490, 670
BstMCI	CGRYCG	2 cut(s)	316, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	528, 653
BstV2I	GAAGAC	1 cut(s)	579
BstZI	CGGCCG	2 cut(s)	313, 660
BsuRI	GGCC	2 cut(s)	315, 662
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	601
CciI	TCATGA	1 cut(s)	126
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	3 cut(s)	15, 127, 436
CviJI	RGCY	8 cut(s)	40, 245, 315, 455, 541, 644, 662, 679
CviKI_1	RGCY	8 cut(s)	40, 245, 315, 455, 541, 644, 662, 679
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	5 cut(s)	131, 177, 468, 492, 672
DpnII	GATC	5 cut(s)	129, 175, 466, 490, 670
EaeI	YGGCCR	2 cut(s)	313, 660
EagI	CGGCCG	2 cut(s)	313, 660
Eam1104I	CTCTTC	3 cut(s)	175, 229, 678
EarI	CTCTTC	3 cut(s)	175, 229, 678
EclXI	CGGCCG	2 cut(s)	313, 660
Eco130I	CCWWGG	1 cut(s)	14
Eco52I	CGGCCG	2 cut(s)	313, 660
Eco57I	CTGAAG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	18, 130, 439
FaiI	YATR	7 cut(s)	16, 128, 437, 471, 473, 495, 623
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	3 cut(s)	14, 126, 435
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	246, 316, 542, 642, 704
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	5 cut(s)	246, 316, 542, 642, 704
FspBI	CTAG	2 cut(s)	456, 680
GluI	GCNGC	5 cut(s)	246, 316, 542, 642, 704
HaeIII	GGCC	2 cut(s)	315, 662
HapII	CCGG	3 cut(s)	312, 341, 638
HgaI	GACGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	3 cut(s)	18, 130, 439
HinfI	GANTC	7 cut(s)	25, 161, 236, 254, 335, 365, 697
HpaII	CCGG	3 cut(s)	312, 341, 638
HphI	GGTGA	6 cut(s)	23, 61, 101, 190, 300, 595
Hpy188I	TCNGA	6 cut(s)	94, 175, 208, 235, 241, 428
Hpy188III	TCNNGA	3 cut(s)	127, 158, 569
Hpy99I	CGWCG	4 cut(s)	212, 335, 661, 718
HpyAV	CCTTC	4 cut(s)	116, 379, 433, 610
HpyCH4III	ACNGT	2 cut(s)	277, 391
HpyCH4IV	ACGT	2 cut(s)	656, 709
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpySE526I	ACGT	2 cut(s)	656, 709
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	3 cut(s)	18, 130, 439
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	129, 175, 466, 490, 670
LmnI	GCTCC	2 cut(s)	45, 323
LpnPI	CCDG	8 cut(s)	22, 264, 276, 325, 354, 391, 651, 661
Lsp1109I	GCAGC	2 cut(s)	528, 653
MaeI	CTAG	2 cut(s)	456, 680
MaeII	ACGT	2 cut(s)	656, 709
MaeIII	GTNAC	2 cut(s)	373, 385
MalI	GATC	5 cut(s)	131, 177, 468, 492, 672
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	5 cut(s)	129, 175, 466, 490, 670
MluCI	AATT	2 cut(s)	46, 430
MlyI	GAGTC	3 cut(s)	155, 248, 344
MmeI	TCCRAC	4 cut(s)	117, 189, 231, 345
MseI	TTAA	2 cut(s)	558, 563
MspA1I	CMGCKG	1 cut(s)	703
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	3 cut(s)	312, 341, 638
MspR9I	CCNGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	5 cut(s)	129, 175, 466, 490, 670
NlaIII	CATG	3 cut(s)	18, 130, 439
NlaIV	GGNNCC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	25, 236, 365, 697
PflFI	GACNNNGTC	1 cut(s)	611
PkrI	GCNGC	5 cut(s)	247, 317, 543, 643, 705
PleI	GAGTC	3 cut(s)	155, 248, 343
PpsI	GAGTC	3 cut(s)	155, 248, 343
PspN4I	GGNNCC	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	611
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	558, 563
SatI	GCNGC	5 cut(s)	246, 316, 542, 642, 704
Sau3AI	GATC	5 cut(s)	129, 175, 466, 490, 670
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	3 cut(s)	155, 248, 344
ScrFI	CCNGG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	46, 430
SsiI	CCGC	5 cut(s)	201, 246, 260, 316, 703
SspMI	CTAG	2 cut(s)	456, 680
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	277, 391
TaiI	ACGT	2 cut(s)	659, 712
TaqI	TCGA	2 cut(s)	333, 450
TasI	AATT	2 cut(s)	46, 430
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	3 cut(s)	248, 318, 706
TfiI	GAWTC	4 cut(s)	25, 236, 365, 697
Tru1I	TTAA	2 cut(s)	558, 563
Tru9I	TTAA	2 cut(s)	558, 563
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	2 cut(s)	541, 641
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	611
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	430
XspI	CTAG	2 cut(s)	456, 680
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.