MD11G1283200.v1.1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003569
Physical Location & Seq
Forward (+)
40149031 .. 40149747
717 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1283200.v1.1.491

Sequence Viewer

Length: 717 bp
ATGGCAAACACATTGGGAAGAAACCTAAATCTCTGCTTCACAAAGATCCGACGGCCACCAATGGGTACAACCCTAGATGACGACGCTCACGGCCGTCCATTACCAACCGCCACCGCATCCACATCCACGTCATCAACGTCCATGATTAAGAACTTTAACTCCCTCTACGATGACCAGTCCACGTCCACCTCAAAATCCCTCAGCTCCTCCCTCCTCTCCACCTCCAACGACTACTCCGACACAGAGGCCCCCGCTCCCGACTTTGCTACCGCCTTTGCCTCCCGACGCTTCTTCTTCTCCTCTCCCGGCCGATCCAACTCCATAGTTGACCAATCATCATTCGTCGCCACGTCATCCTCGTCCAAAACATCAGCCTCCGAGCCCGAAGACCGCACGCTCTTCATCAACCACAGCGTGGCGATCCCCACATTCTCCCCGGATCCCTACCGCGACTTCCGTCTGTCCATGCAGGAGATGGTGGAGGCGCGTGAGAGAACGCCAGACTCGGAGGACGTGAAGAAGAAATCCAACTGGGAGTTTTTGCATGAGCTCCTCCTGTGCTATCTTGCACTGAACCCTAAGAGCACCCACAAGTTTATTATCGGCGCTTTCGCTGATCTTCTTGTCAGCCTCATGCCGTCTCCCGCCGGAGGCTCCCGCATTGAATTAGAACCGGAGTTCACGGCCGGCGTTTGTGAGATTTCACGGTGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

5.42

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 145 - 211 3.1e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 254
AccII CGCG 2 cut(s) 450, 487
AciI CCGC 8 cut(s) 108, 114, 252, 270, 391, 448, 645, 658
AclWI GGATC 5 cut(s) 40, 306, 415, 434, 447
AcoI YGGCCR 4 cut(s) 53, 91, 307, 684
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 3 cut(s) 62, 415, 650
AgsI TTSAA 1 cut(s) 665
AjiI CACGTC 4 cut(s) 129, 183, 351, 514
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 204, 550
AluI AGCT 2 cut(s) 204, 550
Alw21I GWGCWC 2 cut(s) 552, 587
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 5 cut(s) 40, 306, 415, 434, 447
AoxI GGCC 5 cut(s) 53, 91, 246, 307, 684
AspLEI GCGC 2 cut(s) 487, 608
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 2 cut(s) 306, 437
BamHI GGATCC 1 cut(s) 439
BanII GRGCYC 2 cut(s) 384, 552
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 552, 587
BbvCI CCTCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 469
BceAI ACGGC 5 cut(s) 68, 78, 106, 622, 699
BcnI CCSGG 2 cut(s) 306, 437
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 2 cut(s) 74, 715
BfoI RGCGCY 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 306, 437
BmgBI CACGTC 4 cut(s) 129, 183, 351, 514
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 3 cut(s) 249, 441, 655
BmrFI CCNGG 2 cut(s) 306, 437
BmrI ACTGGG 1 cut(s) 541
BmsI GCATC 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 541
BoxI GACNNNNGTC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 306, 437
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 415, 650
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 2 cut(s) 175, 536
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 3 cut(s) 116, 122, 353
BseLI CCNNNNNNNGG 3 cut(s) 62, 415, 650
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 175, 536
BseRI GAGGAG 4 cut(s) 196, 203, 289, 542
BseX3I CGGCCG 3 cut(s) 91, 307, 684
Bsh1236I CGCG 2 cut(s) 450, 487
Bsh1285I CGRYCG 3 cut(s) 94, 310, 687
BshFI GGCC 5 cut(s) 55, 93, 248, 309, 686
BsiEI CGRYCG 3 cut(s) 94, 310, 687
BsiHKAI GWGCWC 2 cut(s) 552, 587
BsiSI CCGG 5 cut(s) 306, 437, 648, 674, 687
BslI CCNNNNNNNGG 3 cut(s) 62, 415, 650
BsmAI GTCTC 1 cut(s) 645
BsmBI CGTCTC 1 cut(s) 645
BsnI GGCC 5 cut(s) 55, 93, 248, 309, 686
Bsp1286I GDGCHC 3 cut(s) 384, 552, 587
Bsp143I GATC 5 cut(s) 45, 311, 420, 439, 616
BspACI CCGC 8 cut(s) 108, 114, 252, 270, 391, 448, 645, 658
BspANI GGCC 5 cut(s) 55, 93, 248, 309, 686
BspCNI CTCAG 1 cut(s) 213
BspFNI CGCG 2 cut(s) 450, 487
BspLI GGNNCC 3 cut(s) 249, 441, 655
BspPI GGATC 5 cut(s) 40, 306, 415, 434, 447
BspQI GCTCTTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 2 cut(s) 175, 536
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 5 cut(s) 45, 311, 420, 439, 616
Bst4CI ACNGT 1 cut(s) 708
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 395, 688
BstDEI CTNAG 2 cut(s) 200, 579
BstF5I GGATG 3 cut(s) 116, 122, 353
BstFNI CGCG 2 cut(s) 450, 487
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 2 cut(s) 487, 608
BstKTI GATC 5 cut(s) 48, 314, 423, 442, 619
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 5 cut(s) 45, 311, 420, 439, 616
BstMCI CGRYCG 3 cut(s) 94, 310, 687
BstPAI GACNNNNGTC 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 304, 435
BstUI CGCG 2 cut(s) 450, 487
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 45, 439
BstYI RGATCY 2 cut(s) 45, 439
BstZI CGGCCG 3 cut(s) 91, 307, 684
BsuRI GGCC 5 cut(s) 55, 93, 248, 309, 686
BtrI CACGTC 4 cut(s) 129, 183, 351, 514
BtsCI GGATG 3 cut(s) 116, 122, 353
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 395, 688
CfoI GCGC 2 cut(s) 487, 608
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 92, 294
Csp6I GTAC 1 cut(s) 66
CviAII CATG 4 cut(s) 142, 466, 545, 634
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 200, 579
DpnI GATC 5 cut(s) 47, 313, 422, 441, 618
DpnII GATC 5 cut(s) 45, 311, 420, 439, 616
DraIII CACNNNGTG 1 cut(s) 415
EaeI YGGCCR 4 cut(s) 53, 91, 307, 684
EagI CGGCCG 3 cut(s) 91, 307, 684
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 550
EclXI CGGCCG 3 cut(s) 91, 307, 684
Eco24I GRGCYC 2 cut(s) 384, 552
Eco52I CGGCCG 3 cut(s) 91, 307, 684
Eco53kI GAGCTC 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 384, 552
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 4 cut(s) 145, 469, 548, 637
FaiI YATR 5 cut(s) 143, 323, 467, 546, 635
FatI CATG 4 cut(s) 141, 465, 544, 633
FauI CCCGC 3 cut(s) 259, 652, 665
FokI GGATG 3 cut(s) 103, 109, 340
FriOI GRGCYC 2 cut(s) 384, 552
FspBI CTAG 2 cut(s) 74, 715
GlaI GCGC 2 cut(s) 486, 607
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 5 cut(s) 55, 93, 248, 309, 686
HapII CCGG 5 cut(s) 306, 437, 648, 674, 687
HgaI GACGC 2 cut(s) 92, 294
HhaI GCGC 2 cut(s) 487, 608
Hin1II CATG 4 cut(s) 145, 469, 548, 637
Hin6I GCGC 2 cut(s) 485, 606
HinP1I GCGC 2 cut(s) 485, 606
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 503
HpaII CCGG 5 cut(s) 306, 437, 648, 674, 687
Hpy166II GTNNAC 4 cut(s) 180, 186, 328, 681
Hpy188I TCNGA 4 cut(s) 50, 238, 379, 508
Hpy188III TCNNGA 2 cut(s) 257, 282
Hpy8I GTNNAC 4 cut(s) 180, 186, 328, 681
Hpy99I CGWCG 4 cut(s) 54, 86, 288, 347
HpyCH4III ACNGT 1 cut(s) 708
HpyCH4IV ACGT 5 cut(s) 128, 137, 182, 350, 513
HpyCH4V TGCA 4 cut(s) 469, 544, 569, 711
HpyF3I CTNAG 2 cut(s) 200, 579
HpySE526I ACGT 5 cut(s) 128, 137, 182, 350, 513
Hsp92II CATG 4 cut(s) 145, 469, 548, 637
HspAI GCGC 2 cut(s) 485, 606
KroI GCCGGC 1 cut(s) 686
KroNI GCCGGC 1 cut(s) 688
Kzo9I GATC 5 cut(s) 45, 311, 420, 439, 616
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 4 cut(s) 209, 259, 555, 659
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 74, 715
MaeII ACGT 5 cut(s) 128, 137, 182, 350, 513
MalI GATC 5 cut(s) 47, 313, 422, 441, 618
MbiI CCGCTC 1 cut(s) 254
MboI GATC 5 cut(s) 45, 311, 420, 439, 616
MboII GAAGA 8 cut(s) 30, 283, 286, 391, 398, 529, 532, 611
MflI RGATCY 2 cut(s) 45, 439
MhlI GDGCHC 3 cut(s) 384, 552, 587
MluCI AATT 1 cut(s) 665
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 5 cut(s) 73, 249, 261, 339, 552
MroNI GCCGGC 1 cut(s) 686
MseI TTAA 2 cut(s) 147, 156
MspI CCGG 5 cut(s) 306, 437, 648, 674, 687
MspR9I CCNGG 2 cut(s) 306, 437
MvnI CGCG 2 cut(s) 450, 487
NaeI GCCGGC 1 cut(s) 688
NciI CCSGG 2 cut(s) 306, 437
NdeII GATC 5 cut(s) 45, 311, 420, 439, 616
NgoMIV GCCGGC 1 cut(s) 686
NlaIII CATG 4 cut(s) 145, 469, 548, 637
NlaIV GGNNCC 3 cut(s) 249, 441, 655
PciSI GCTCTTC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 3 cut(s) 134, 234, 356
PdiI GCCGGC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 415
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 552
PspN4I GGNNCC 3 cut(s) 249, 441, 655
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 2 cut(s) 45, 439
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SacI GAGCTC 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 147, 156
Sau3AI GATC 5 cut(s) 45, 311, 420, 439, 616
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 306, 437
SduI GDGCHC 3 cut(s) 384, 552, 587
SfaNI GCATC 1 cut(s) 125
Sse9I AATT 1 cut(s) 665
SsiI CCGC 8 cut(s) 108, 114, 252, 270, 391, 448, 645, 658
SspMI CTAG 2 cut(s) 74, 715
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 304, 435
TaaI ACNGT 1 cut(s) 708
TaiI ACGT 5 cut(s) 131, 140, 185, 353, 516
TasI AATT 1 cut(s) 665
Tru1I TTAA 2 cut(s) 147, 156
Tru9I TTAA 2 cut(s) 147, 156
TscAI CASTG 1 cut(s) 576
TspDTI ATGAA 1 cut(s) 391
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 576
Van91I CCANNNNNTGG 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 2 cut(s) 74, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.