AT1G07770

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003734
Physical Location & Seq
Reverse (-)
2407411 .. 2409791
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07770.1

Sequence Viewer

Length: 393 bp
ATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTCATGCAGAAGCACGGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAGATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTTGATGTTGGTGTCAAGGAAATTGAAGGTTGGACTGCCCGTTTGCTCCCTTCTAGACAGTTTGGTTACATCGTGCTGACTACATCTGCTGGCATTATGGACCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGCAAGGTTCTCGGCTTCTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.89

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.8e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 4 cut(s) 191, 196, 208, 260
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
AoxI GGCC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 358, 392
BclI TGATCA 1 cut(s) 78
BfaI CTAG 2 cut(s) 288, 348
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
BseMII CTCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 85
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 78, 170, 180
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 3 cut(s) 78, 170, 180
Bst4CI ACNGT 2 cut(s) 134, 294
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 3 cut(s) 81, 173, 183
BstMBI GATC 3 cut(s) 78, 170, 180
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 325
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 40, 76, 121, 338
CviJI RGCY 4 cut(s) 85, 228, 347, 381
CviKI_1 RGCY 4 cut(s) 85, 228, 347, 381
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 80, 172, 182
DpnII GATC 3 cut(s) 78, 170, 180
Eco147I AGGCCT 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 334
FaeI CATG 4 cut(s) 43, 79, 124, 341
FaiI YATR 6 cut(s) 41, 77, 122, 156, 332, 339
FatI CATG 4 cut(s) 39, 75, 120, 337
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 2 cut(s) 288, 348
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 4 cut(s) 43, 79, 124, 341
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 34, 76, 288
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 96, 195, 254, 294, 345
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 4 cut(s) 43, 79, 124, 341
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 170, 180
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 4 cut(s) 56, 67, 159, 309
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 288, 348
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 134, 299
MalI GATC 3 cut(s) 80, 172, 182
MboI GATC 3 cut(s) 78, 170, 180
MboII GAAGA 3 cut(s) 353, 367, 376
MflI RGATCY 1 cut(s) 170
MluCI AATT 2 cut(s) 191, 255
MmeI TCCRAC 2 cut(s) 245, 343
MnlI CCTC 4 cut(s) 53, 60, 100, 359
MseI TTAA 1 cut(s) 21
NdeII GATC 3 cut(s) 78, 170, 180
NlaIII CATG 4 cut(s) 43, 79, 124, 341
NmeAIII GCCGAG 1 cut(s) 357
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 3 cut(s) 78, 170, 180
Sau96I GGNCC 1 cut(s) 334
SetI ASST 6 cut(s) 75, 206, 235, 265, 349, 375
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 191, 255
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 2 cut(s) 288, 348
StuI AGGCCT 1 cut(s) 85
TaaI ACNGT 2 cut(s) 134, 294
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 191, 255
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 288, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.