Rw2G029840

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003734
Physical Location & Seq
Forward (+)
48417481 .. 48418237
757 bp
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UTR
Exon/CDS
Intron
Rw2G029840.1

Sequence Viewer

Length: 318 bp
ATGATCAGGCCTTCGTCCAAGGTCATCATCAGGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTTAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTTCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

9.61

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 4 - 105 9.1e-16 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 267
AgsI TTSAA 2 cut(s) 116, 185
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 8
BauI CACGAG 1 cut(s) 263
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciVI GTATCC 1 cut(s) 218
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 198, 273
BfuI GTATCC 1 cut(s) 218
BglII AGATCT 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 18
BshFI GGCC 1 cut(s) 10
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 3, 95, 259
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 3 cut(s) 3, 95, 259
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 59, 219
BstKTI GATC 3 cut(s) 6, 98, 262
BstMBI GATC 3 cut(s) 3, 95, 259
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 95
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 10
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 10, 130, 189, 197, 272
CviKI_1 RGCY 5 cut(s) 10, 130, 189, 197, 272
DpnI GATC 3 cut(s) 5, 97, 261
DpnII GATC 3 cut(s) 3, 95, 259
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 259
FaiI YATR 4 cut(s) 47, 63, 81, 257
FatI CATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 2 cut(s) 198, 273
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 99, 213, 263
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 21, 179
HpyCH4III ACNGT 2 cut(s) 59, 219
HpyCH4V TGCA 1 cut(s) 49
Hsp92II CATG 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 95, 259
LpnPI CCDG 4 cut(s) 16, 84, 175, 234
MaeI CTAG 2 cut(s) 198, 273
MalI GATC 3 cut(s) 5, 97, 261
MboI GATC 3 cut(s) 3, 95, 259
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 95
MnlI CCTC 3 cut(s) 120, 165, 259
MseI TTAA 1 cut(s) 120
NdeII GATC 3 cut(s) 3, 95, 259
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 35
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 95
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 3 cut(s) 3, 95, 259
SetI ASST 4 cut(s) 24, 35, 274, 300
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 2 cut(s) 198, 273
StuI AGGCCT 1 cut(s) 10
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 59, 219
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 198
XspI CTAG 2 cut(s) 198, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.