Rh4BG188200

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003734
Physical Location & Seq
Forward (+)
32813449 .. 32816039
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG188200.1

Sequence Viewer

Length: 669 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGACTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGAATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGAGTTGCTATTATGTTCCACCATCCCTTCGTCCCAAACTAACGACTGCTAGGACACCACCATTTGCTGGAACAAGGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTGTGGGACTTTATCCAGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGCACAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAGCTCTGCCAATCAACAAAAATATCGGCCCCCTGGAAAGAGCAGTCCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

222

Amino Acids

24.64

Weight (kDa)

10.23

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 128 1.7e-19 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 4 cut(s) 22, 191, 260, 613
AjnI CCWGG 2 cut(s) 582, 646
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 3 cut(s) 347, 505, 618
AluI AGCT 3 cut(s) 347, 505, 618
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 2 cut(s) 83, 641
ApeKI GCWGC 2 cut(s) 460, 559
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 1 cut(s) 642
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 620
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 2 cut(s) 472, 571
BccI CCATC 1 cut(s) 400
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 584, 648
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 5 cut(s) 273, 348, 420, 471, 510
BfmI CTRYAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 1 cut(s) 170
BisI GCNGC 2 cut(s) 461, 560
BlsI GCNGC 2 cut(s) 462, 561
Bme1390I CCNGG 2 cut(s) 584, 648
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 2 cut(s) 584, 648
BmsI GCATC 2 cut(s) 16, 577
BsaJI CCNNGG 2 cut(s) 93, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 2 cut(s) 584, 648
BseDI CCNNGG 2 cut(s) 93, 646
BseGI GGATG 2 cut(s) 392, 592
BseLI CCNNNNNNNGG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 495
BseXI GCAGC 2 cut(s) 472, 571
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 2 cut(s) 85, 643
BsiHKAI GWGCWC 1 cut(s) 620
BslFI GGGAC 2 cut(s) 387, 499
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 387, 499
BsnI GGCC 2 cut(s) 85, 643
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 170
BspANI GGCC 2 cut(s) 85, 643
BspHI TCATGA 2 cut(s) 75, 330
BspLI GGNNCC 1 cut(s) 644
BspQI GCTCTTC 2 cut(s) 29, 608
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 93, 646
BssMI GATC 2 cut(s) 78, 170
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 584, 648
Bst4CI ACNGT 3 cut(s) 134, 184, 294
Bst6I CTCTTC 3 cut(s) 29, 50, 608
BstAPI GCANNNNNTGC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 537
BstF5I GGATG 2 cut(s) 392, 592
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 2 cut(s) 81, 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 78, 170
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 2 cut(s) 584, 648
BstNSI RCATGY 2 cut(s) 43, 539
BstSCI CCNGG 2 cut(s) 582, 646
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 472, 571
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 85, 643
BtsCI GGATG 2 cut(s) 392, 592
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 2 cut(s) 75, 330
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 40, 76, 331, 536
CviJI RGCY 9 cut(s) 85, 205, 264, 272, 347, 505, 578, 618, 643
CviKI_1 RGCY 9 cut(s) 85, 205, 264, 272, 347, 505, 578, 618, 643
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 172
DpnII GATC 2 cut(s) 78, 170
Eam1104I CTCTTC 3 cut(s) 29, 50, 608
EarI CTCTTC 3 cut(s) 29, 50, 608
Ecl136II GAGCTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 618
Eco57I CTGAAG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 582, 646
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 4 cut(s) 43, 79, 334, 539
FaqI GGGAC 2 cut(s) 387, 499
FatI CATG 4 cut(s) 39, 75, 330, 535
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 461, 560
FokI GGATG 2 cut(s) 379, 599
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 461, 560
FspBI CTAG 5 cut(s) 273, 348, 420, 471, 510
GlaI GCGC 1 cut(s) 563
GluI GCNGC 2 cut(s) 461, 560
HaeIII GGCC 2 cut(s) 85, 643
HhaI GCGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 43, 79, 334, 539
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 3 cut(s) 9, 327, 334
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 5 cut(s) 76, 174, 288, 331, 338
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 4 cut(s) 96, 254, 407, 531
HpyCH4III ACNGT 3 cut(s) 134, 184, 294
HpyCH4V TGCA 4 cut(s) 124, 500, 535, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
Hsp92II CATG 4 cut(s) 43, 79, 334, 539
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 170
LguI GCTCTTC 2 cut(s) 29, 608
LmnI GCTCC 2 cut(s) 449, 457
Lsp1109I GCAGC 2 cut(s) 472, 571
LweI GCATC 2 cut(s) 16, 577
MaeI CTAG 5 cut(s) 273, 348, 420, 471, 510
MalI GATC 2 cut(s) 80, 172
MboI GATC 2 cut(s) 78, 170
MboII GAAGA 4 cut(s) 46, 67, 272, 625
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 1 cut(s) 566
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 4 cut(s) 51, 195, 240, 334
MslI CAYNNNNRTG 1 cut(s) 554
MspR9I CCNGG 2 cut(s) 584, 648
MvaI CCWGG 2 cut(s) 584, 648
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeII GATC 2 cut(s) 78, 170
NlaIII CATG 4 cut(s) 43, 79, 334, 539
NlaIV GGNNCC 1 cut(s) 644
NspI RCATGY 2 cut(s) 43, 539
OliI CACNNNNGTG 1 cut(s) 554
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 2 cut(s) 75, 330
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 2 cut(s) 29, 608
PfeI GAWTC 2 cut(s) 327, 334
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 462, 561
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 582, 646
PspGI CCWGG 2 cut(s) 582, 646
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 1 cut(s) 642
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 620
SapI GCTCTTC 2 cut(s) 29, 608
SatI GCNGC 2 cut(s) 461, 560
Sau3AI GATC 2 cut(s) 78, 170
Sau96I GGNCC 1 cut(s) 642
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 584, 648
SduI GDGCHC 1 cut(s) 620
SetI ASST 7 cut(s) 75, 99, 349, 480, 507, 556, 620
SfaNI GCATC 2 cut(s) 16, 577
SfcI CTRYAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 554
SphI GCATGC 1 cut(s) 539
Sse9I AATT 1 cut(s) 566
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 5 cut(s) 273, 348, 420, 471, 510
SstI GAGCTC 1 cut(s) 620
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 582, 646
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 134, 184, 294
TasI AATT 1 cut(s) 566
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 2 cut(s) 327, 334
TscAI CASTG 1 cut(s) 502
TseI GCWGC 2 cut(s) 460, 559
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 437
XceI RCATGY 2 cut(s) 43, 539
XspI CTAG 5 cut(s) 273, 348, 420, 471, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.