Rw4G021200

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003734
Physical Location & Seq
Reverse (-)
45754875 .. 45755766
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021200.1

Sequence Viewer

Length: 420 bp
ATGGTGAGAGTTAGCGTGCTAAATGATGCTCTCAAGAGCATGTACAATGAAGAGAAACGTGGTAAGCGTCAGGTGATGATCAGGCCGTCATCCAAAGTGATCATCAAGTTTCTTATTGTCATGCAAAAGCATGGATACATTGGAGAGTTCGAGTATGTTGACGACCACAGCTCTGGCAAAATTGTGGTCGAACTGAATGGAAGGCTTAAAAAGTGTGGGGTCATTAGTCCTCGTTTTGATGTTGGTGTTAAGGAGATTGAAGGTTGGACTGCCAGGTTGCTTCCTTCAAGACAGTTTGGATATATCGTGCTCACCACTTCTGCTGGAATCATGGACCATGAAGAGGCTAGAAGAAAGAATGTTATTTCTTCGAGATGTTCCATATTATGTTTGTATGCTGTTTATTTCTCCGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

139

Amino Acids

15.83

Weight (kDa)

9.48

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 121 8.8e-16 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 260, 288
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw21I GWGCWC 1 cut(s) 312
AoxI GGCC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 16, 85, 304
AvaII GGWCC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 274
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 2 cut(s) 78, 99
BfaI CTAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 343
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 343
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 99
BspANI GGCC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 78, 99
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 45, 336
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 81, 102
BstMBI GATC 2 cut(s) 78, 99
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 43
CviAII CATG 5 cut(s) 40, 121, 131, 331, 338
CviJI RGCY 4 cut(s) 85, 171, 205, 347
CviKI_1 RGCY 4 cut(s) 85, 171, 205, 347
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 101
DpnII GATC 2 cut(s) 78, 99
Eam1104I CTCTTC 2 cut(s) 45, 336
EarI CTCTTC 2 cut(s) 45, 336
Eco47I GGWCC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 272
FaeI CATG 5 cut(s) 43, 124, 134, 334, 341
FatI CATG 5 cut(s) 39, 120, 130, 330, 337
FbaI TGATCA 2 cut(s) 78, 99
FokI GGATG 1 cut(s) 76
FspBI CTAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 56
Hin1II CATG 5 cut(s) 43, 124, 134, 334, 341
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 327
HphI GGTGA 3 cut(s) 16, 85, 304
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 34, 288, 372
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 195, 254, 294
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 5 cut(s) 43, 124, 134, 334, 341
Ksp22I TGATCA 2 cut(s) 78, 99
Kzo9I GATC 2 cut(s) 78, 99
LpnPI CCDG 6 cut(s) 56, 67, 159, 259, 286, 309
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 80, 101
MboI GATC 2 cut(s) 78, 99
MboII GAAGA 4 cut(s) 62, 353, 360, 363
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 2 cut(s) 240, 337
MseI TTAA 2 cut(s) 207, 249
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
NdeII GATC 2 cut(s) 78, 99
NlaIII CATG 5 cut(s) 43, 124, 134, 334, 341
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 207, 249
Sau3AI GATC 2 cut(s) 78, 99
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 312
SetI ASST 5 cut(s) 61, 75, 173, 265, 278
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 180
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 150, 189, 371
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 207, 249
Tru9I TTAA 2 cut(s) 207, 249
TspDTI ATGAA 2 cut(s) 63, 354
TspGWI ACGGA 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.