Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003734

Physical Location & Seq

Genomic Coordinates Reverse (-)

44272176 .. 44276284

Gene Structure 4109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGTGTTTATATAGTTGGAATATCCATCGTAATTTATCAACGTTGACTGTGGATAATTGTACCACTAATGATGCCATGATTGAATTACTTCTTGTGACTTTGAGATCAAATTCATTGTTAGTTGGTGGCAAGTTATTGCATATGCGTTGTTGTGCACACATATTGAATTTGATAGTTAGGGATGGTTTGGATGTAATTCAGGAGAGTATTGAGACCATTAGGTCTAGTGTTGCTTATTGGACGGGTGGCCCAAAAAGAGAAGAAACATTTGCTAAGGCAGCTCACCAATTGGATGTTGCATGTAATAGGAAGTTGATACTTGATTGTAAGACGAGATGGAACTCCACATATTTGATGTTGCAGACAGCATTGGAGTATAAGACAGTGTTTCCAGCTTTAAAGACTAGGGGATATAAGGATGTGCCAACTGAGAATGACTGGAATCTCGTGACAGTGATTGCTGAAAAGCTGCAATTGTTTTACAAGACGACTGAACTGCTATCTGGTACCAAGTATCCCACAGCCAACTTGTTATTCCCAAATATTTGCAACATTAAGTTGGCAATATCTAAGTGGCTTGAATCTGACACAAATGAAGTGGAAGAAATGGCAAAGAAGATGGAAGAAAAGTTTGTCAAGTATTGGAGTGTGATTGGAACAATTGTTGTTGCCACTATTTTAGATCCCCGGTATAAGCTGAAGTTGGTTGAATTTTACTTCAAGCAAATTTATCCTTATAGAGCTGCATTGGAAATTGAGAGAGTCAAGAGGCTTGCTTATGACTTGGTCAATGAGTATAATGCATGTGCTGTATCTCACGTATCTGATAACTCGTCCATGTTTGAAAGTTCAAGGCCAGGCGATGATGATTTGGGGGATGATAACATGGATGCTTATGATGCTTATGTTTTTAACTCTAGCAAGGATAATGACAAGTCTGACTTGGATAGGTATCTGGAGGAGGCCGTTTTACCGAGGATAAATGATAAGGAGTTCGATATTTTATACTGGTGGAAGACAAGTGGGATGAAATATCCTACTTTGTATAAGGTTGCTCGTGACATTCTAGCTATTCATGTATCTACTGTTGCCTCAGAGTCGACATTTAGTACTGGTGGAAGGATTGTGAGCCCGCATAGGAATCGACTTCACTCAAACACAGTGGAGGCTTTAATCTTAAAGGATCGTGACATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

400

Amino Acids

45.97

Weight (kDa)

6.04

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	169 - 267	2.2e-28	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	315 - 394	8.9e-27	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07770 AT1G07770 AT1G07770 AT3G46040 AT5G59850
fragaria_vesca	FvH4_3g35110
rosa_chinensis	RchiOBHm_Chr1g0317511 RchiOBHm_Chr1g0324641 RchiOBHm_Chr1g0365891 RchiOBHm_Chr3g0472351 RchiOBHm_Chr5g0063111 RchiOBHm_Chr7g0183941
rosa_laevigata	RLG00000027380
rosa_multiflora	Rmu_sc0002438.1_g000009
rosa_roxburghii	Rroxscaffold_4G00290750 Rroxscaffold_6G00400830
rosa_rugosa	Rorug01G0325300 Rorug01G0325400 Rorug05G0080600 Rorug05G0354300
rosa_samantha	Rh1BG295000 Rh3DG172800 Rh4BG188200 Rh5CG453100
rosa_wichuraiana	Rw0G004860 Rw0G014020 Rw1G029670 Rw2G018770 Rw2G029840 Rw4G014240 Rw4G021200 Rw5G038980 Rw7G013420 Rw7G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	1103
AciI	CCGC	1 cut(s)	1136
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	2 cut(s)	680, 1194
AcsI	RAATTY	4 cut(s)	112, 169, 713, 729
AcuI	CTGAAG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	64, 511, 1114
AgsI	TTSAA	7 cut(s)	86, 169, 584, 713, 724, 848, 855
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	6 cut(s)	284, 398, 472, 700, 746, 1073
AluI	AGCT	6 cut(s)	284, 398, 472, 700, 746, 1073
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	209
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	680, 1194
AoxI	GGCC	3 cut(s)	250, 857, 966
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	281, 472, 746
ApoI	RAATTY	4 cut(s)	112, 169, 713, 729
Asp700I	GAANNNNTTC	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	1136
BauI	CACGAG	2 cut(s)	449, 1059
BbsI	GAAGAC	1 cut(s)	1025
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	293, 459, 733
BccI	CCATC	4 cut(s)	36, 179, 333, 616
BceAI	ACGGC	1 cut(s)	953
BcgI	CGANNNNNNTGC	4 cut(s)	481, 515, 1127, 1161
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	4 cut(s)	228, 408, 921, 1070
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	3 cut(s)	282, 473, 747
BlsI	GCNGC	3 cut(s)	283, 474, 748
BmcAI	AGTACT	1 cut(s)	1114
Bme1390I	CCNGG	2 cut(s)	691, 861
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	691, 861
BmsI	GCATC	3 cut(s)	64, 883, 892
BpiI	GAAGAC	1 cut(s)	1025
BpmI	CTGGAG	1 cut(s)	980
Bpu10I	CCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	691
BsaAI	YACGTR	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	954
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	689, 977
Bse1I	ACTGG	3 cut(s)	446, 1016, 1120
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	2 cut(s)	689, 977
BseGI	GGATG	7 cut(s)	190, 199, 301, 427, 886, 898, 1035
BseJI	GATNNNNATC	1 cut(s)	954
BseMII	CTCAG	2 cut(s)	423, 1110
BseNI	ACTGG	3 cut(s)	446, 1016, 1120
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	293, 459, 733
BshFI	GGCC	3 cut(s)	252, 859, 968
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	209
BsnI	GGCC	3 cut(s)	252, 859, 968
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	160, 1136
Bsp143I	GATC	3 cut(s)	107, 685, 1186
BspACI	CCGC	1 cut(s)	1136
BspANI	GGCC	3 cut(s)	252, 859, 968
BspCNI	CTCAG	2 cut(s)	424, 1109
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	680, 1194
BspT107I	GGYRCC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	446, 1016, 1120
BssECI	CCNNGG	2 cut(s)	689, 977
BssMI	GATC	3 cut(s)	107, 685, 1186
BssSI	CACGAG	2 cut(s)	449, 1059
Bst2BI	CACGAG	2 cut(s)	449, 1059
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	5 cut(s)	52, 388, 457, 1090, 1165
BstBAI	YACGTR	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	777, 1136
BstDEI	CTNAG	4 cut(s)	276, 432, 573, 1096
BstF5I	GGATG	7 cut(s)	190, 199, 301, 427, 886, 898, 1035
BstKTI	GATC	3 cut(s)	110, 688, 1189
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	107, 685, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 902
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	2 cut(s)	306, 810
BstSCI	CCNGG	2 cut(s)	689, 859
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	293, 459, 733
BstV2I	GAAGAC	1 cut(s)	1025
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	3 cut(s)	252, 859, 968
BtgZI	GCGATG	1 cut(s)	879
BtsCI	GGATG	7 cut(s)	190, 199, 301, 427, 886, 898, 1035
BtsIMutI	CAGTG	4 cut(s)	393, 462, 1170, 1198
Cac8I	GCNNGC	2 cut(s)	777, 1136
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	63, 510, 1113
CspCI	CAANNNNNGTGG	4 cut(s)	582, 617, 1146, 1181
CviAII	CATG	6 cut(s)	79, 303, 807, 841, 889, 1079
CviQI	GTAC	3 cut(s)	63, 510, 1113
DdeI	CTNAG	4 cut(s)	276, 432, 573, 1096
DpnI	GATC	3 cut(s)	109, 687, 1188
DpnII	GATC	3 cut(s)	107, 685, 1186
DraI	TTTAAA	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	1136
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	859
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	1136
FaeI	CATG	6 cut(s)	82, 306, 810, 844, 892, 1082
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FatI	CATG	6 cut(s)	78, 302, 806, 840, 888, 1078
FauI	CCCGC	1 cut(s)	1143
FauNDI	CATATG	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	1103
Fnu4HI	GCNGC	3 cut(s)	282, 473, 747
FokI	GGATG	7 cut(s)	197, 206, 308, 434, 893, 905, 1042
FriOI	GRGCYC	1 cut(s)	1136
Fsp4HI	GCNGC	3 cut(s)	282, 473, 747
FspBI	CTAG	4 cut(s)	228, 408, 921, 1070
GluI	GCNGC	3 cut(s)	282, 473, 747
GsuI	CTGGAG	1 cut(s)	980
HaeIII	GGCC	3 cut(s)	252, 859, 968
HapII	CCGG	1 cut(s)	691
Hin1II	CATG	6 cut(s)	82, 306, 810, 844, 892, 1082
HincII	GTYRAC	2 cut(s)	48, 1104
HindII	GTYRAC	2 cut(s)	48, 1104
HinfI	GANTC	5 cut(s)	445, 584, 765, 1100, 1144
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	48, 158, 1104
Hpy188I	TCNGA	4 cut(s)	589, 829, 943, 1099
Hpy188III	TCNNGA	6 cut(s)	203, 451, 769, 959, 1061, 1190
Hpy8I	GTNNAC	3 cut(s)	48, 158, 1104
HpyAV	CCTTC	1 cut(s)	1116
HpyCH4III	ACNGT	5 cut(s)	52, 388, 457, 1090, 1165
HpyCH4IV	ACGT	2 cut(s)	44, 822
HpyCH4V	TGCA	8 cut(s)	142, 158, 302, 364, 475, 552, 749, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 902
HpyF3I	CTNAG	4 cut(s)	276, 432, 573, 1096
HpySE526I	ACGT	2 cut(s)	44, 822
Hsp92II	CATG	6 cut(s)	82, 306, 810, 844, 892, 1082
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	107, 685, 1186
Lsp1109I	GCAGC	3 cut(s)	293, 459, 733
LweI	GCATC	3 cut(s)	64, 883, 892
MaeI	CTAG	4 cut(s)	228, 408, 921, 1070
MaeII	ACGT	2 cut(s)	44, 822
MaeIII	GTNAC	4 cut(s)	97, 451, 1061, 1190
MalI	GATC	3 cut(s)	109, 687, 1188
MboI	GATC	3 cut(s)	107, 685, 1186
MboII	GAAGA	5 cut(s)	275, 617, 631, 638, 1030
MfeI	CAATTG	3 cut(s)	290, 476, 663
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	160, 1136
MlyI	GAGTC	2 cut(s)	774, 1109
MnlI	CCTC	6 cut(s)	765, 955, 958, 972, 1105, 1162
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	5 cut(s)	401, 558, 915, 1175, 1181
MspI	CCGG	1 cut(s)	691
MspR9I	CCNGG	2 cut(s)	691, 861
MunI	CAATTG	3 cut(s)	290, 476, 663
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	281, 902
NciI	CCSGG	1 cut(s)	691
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	3 cut(s)	107, 685, 1186
NlaIII	CATG	6 cut(s)	82, 306, 810, 844, 892, 1082
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	4 cut(s)	97, 451, 1061, 1190
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	306, 810
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	445, 584, 1144
PflFI	GACNNNGTC	1 cut(s)	788
PkrI	GCNGC	3 cut(s)	283, 474, 748
PleI	GAGTC	2 cut(s)	773, 1108
PpsI	GAGTC	2 cut(s)	773, 1108
Ppu21I	YACGTR	1 cut(s)	823
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	788
RsaI	GTAC	3 cut(s)	64, 511, 1114
RsaNI	GTAC	3 cut(s)	63, 510, 1113
SalI	GTCGAC	1 cut(s)	1102
SaqAI	TTAA	5 cut(s)	401, 558, 915, 1175, 1181
SatI	GCNGC	3 cut(s)	282, 473, 747
Sau3AI	GATC	3 cut(s)	107, 685, 1186
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	1114
SchI	GAGTC	2 cut(s)	774, 1109
ScrFI	CCNGG	2 cut(s)	691, 861
SduI	GDGCHC	2 cut(s)	160, 1136
SfaNI	GCATC	3 cut(s)	64, 883, 892
SsiI	CCGC	1 cut(s)	1136
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	4 cut(s)	228, 408, 921, 1070
StyD4I	CCNGG	2 cut(s)	689, 859
TaaI	ACNGT	5 cut(s)	52, 388, 457, 1090, 1165
TaiI	ACGT	2 cut(s)	47, 825
TaqI	TCGA	3 cut(s)	999, 1103, 1147
TatI	WGTACW	1 cut(s)	1112
TfiI	GAWTC	3 cut(s)	445, 584, 1144
Tru1I	TTAA	5 cut(s)	401, 558, 915, 1175, 1181
Tru9I	TTAA	5 cut(s)	401, 558, 915, 1175, 1181
TscAI	CASTG	3 cut(s)	393, 462, 1170
TseFI	GTSAC	4 cut(s)	97, 451, 1061, 1190
TseI	GCWGC	3 cut(s)	281, 472, 746
Tsp45I	GTSAC	4 cut(s)	97, 451, 1061, 1190
TspDTI	ATGAA	4 cut(s)	105, 612, 1046, 1067
TspRI	CASTG	3 cut(s)	393, 462, 1170
Tth111I	GACNNNGTC	1 cut(s)	788
VneI	GTGCAC	1 cut(s)	156
XapI	RAATTY	4 cut(s)	112, 169, 713, 729
XceI	RCATGY	2 cut(s)	306, 810
XmiI	GTMKAC	1 cut(s)	1103
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	228, 408, 921, 1070
ZrmI	AGTACT	1 cut(s)	1114
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.