Rorug05G0080600

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003734
Physical Location & Seq
Reverse (-)
6975889 .. 6976746
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0080600.1

Sequence Viewer

Length: 519 bp
ATGGATAAGCAAGATAGTCACCATAACCAAGCCCTCTTGCCAAACCAGTGTGGCTCAAGCCATAGCCAAACCATAGACGCACCACTCCCCTTAGTTTGGTCCATAATCCGCCAATTCGACAACCCTCAAGCCCACAAGCAGTTCATCAAGAGCTGCACCATGCGCGCCGGCGACGGCGGCACCGCCGGGAGCATACGTGAGGTTATAGTCAGCTCCGGCTTGCCGGGGAGTAGCAGCATGGAGAGGCTTGACAAGCTCGACGACGACAAGCATGTCATGAATTTCAGCATTGTTGGTGGTGACCACAAGCTTGCAAACTATAGTTCCATCACCACACTGCATAAAGAGGACGAGGAAGAAGAAAAGGGTGGATCGGAAAAGACGGTGGTGACTCAGTCGTATGTGGTGGATGTTCCGGCCGGAAGTAGCAAGGAGGATACTTGTTTGTTTGCTGATACTATTGTTGGATGTAACCTGAGATCATTGGCTAAAGTCACAGAAAAGATGGCTGGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

172

Amino Acids

18.6

Weight (kDa)

5.42

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 20 - 166 2.1e-12 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 109, 177, 183
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 96
AluBI AGCT 4 cut(s) 153, 213, 256, 310
AluI AGCT 4 cut(s) 153, 213, 256, 310
AlwI GGATC 1 cut(s) 379
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 2 cut(s) 153, 234
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 2 cut(s) 165, 167
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 2 cut(s) 187, 225
AsuHPI GGTGA 4 cut(s) 11, 311, 322, 400
AvaII GGWCC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 140, 246
BccI CCATC 2 cut(s) 335, 499
BceAI ACGGC 1 cut(s) 190
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 2 cut(s) 187, 225
BfmI CTRYAG 1 cut(s) 319
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 3 cut(s) 154, 178, 235
BlsI GCNGC 3 cut(s) 155, 179, 236
Bme1390I CCNGG 2 cut(s) 187, 225
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 187, 225
BpuEI CTTGAG 2 cut(s) 40, 111
BpuMI CCSGG 2 cut(s) 187, 225
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 415, 473
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 407, 467
BseNI ACTGG 1 cut(s) 46
BsePI GCGCGC 1 cut(s) 163
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 2 cut(s) 140, 246
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 420
BsiSI CCGG 6 cut(s) 168, 186, 216, 224, 416, 420
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 371, 479
BspACI CCGC 3 cut(s) 109, 177, 183
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 406, 468
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 224
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 2 cut(s) 371, 479
Bst4CI ACNGT 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 4 cut(s) 165, 169, 221, 312
BstDEI CTNAG 3 cut(s) 91, 393, 476
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 2 cut(s) 415, 473
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 2 cut(s) 165, 167
BstKTI GATC 2 cut(s) 374, 482
BstMBI GATC 2 cut(s) 371, 479
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 3 cut(s) 162, 177, 253
BstNSI RCATGY 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 185, 223
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 140, 246
BstZI CGGCCG 1 cut(s) 417
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 2 cut(s) 415, 473
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 2 cut(s) 53, 335
Cac8I GCNNGC 4 cut(s) 165, 169, 221, 312
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 165, 167
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 86
CviAII CATG 4 cut(s) 160, 238, 272, 277
DdeI CTNAG 3 cut(s) 91, 393, 476
DpnI GATC 2 cut(s) 373, 481
DpnII GATC 2 cut(s) 371, 479
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 417
EagI CGGCCG 1 cut(s) 417
EciI GGCGGA 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 299
FaeI CATG 4 cut(s) 163, 241, 275, 280
FatI CATG 4 cut(s) 159, 237, 271, 276
Fnu4HI GCNGC 3 cut(s) 154, 178, 235
FokI GGATG 2 cut(s) 422, 480
Fsp4HI GCNGC 3 cut(s) 154, 178, 235
GlaI GCGC 2 cut(s) 164, 166
GluI GCNGC 3 cut(s) 154, 178, 235
HaeIII GGCC 1 cut(s) 419
HapII CCGG 6 cut(s) 168, 186, 216, 224, 416, 420
HgaI GACGC 1 cut(s) 86
HhaI GCGC 2 cut(s) 165, 167
Hin1II CATG 4 cut(s) 163, 241, 275, 280
Hin6I GCGC 2 cut(s) 163, 165
HinP1I GCGC 2 cut(s) 163, 165
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 391
HpaII CCGG 6 cut(s) 168, 186, 216, 224, 416, 420
HphI GGTGA 4 cut(s) 11, 311, 322, 400
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 148, 277
Hpy99I CGWCG 3 cut(s) 176, 263, 266
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 156, 314, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 177, 253
HpyF3I CTNAG 3 cut(s) 91, 393, 476
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 4 cut(s) 163, 241, 275, 280
HspAI GCGC 2 cut(s) 163, 165
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 371, 479
LmnI GCTCC 2 cut(s) 189, 218
LpnPI CCDG 9 cut(s) 59, 181, 199, 229, 237, 429, 433, 488, 495
Lsp1109I GCAGC 2 cut(s) 140, 246
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 6 cut(s) 17, 299, 388, 470, 493, 512
MalI GATC 2 cut(s) 373, 481
MboI GATC 2 cut(s) 371, 479
MboII GAAGA 2 cut(s) 368, 371
MluCI AATT 2 cut(s) 113, 280
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 7 cut(s) 44, 135, 193, 237, 340, 346, 427
MreI CGCCGGCG 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 167
MspI CCGG 6 cut(s) 168, 186, 216, 224, 416, 420
MspR9I CCNGG 2 cut(s) 187, 225
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 162, 177, 253
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 2 cut(s) 187, 225
NdeII GATC 2 cut(s) 371, 479
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 4 cut(s) 163, 241, 275, 280
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 4 cut(s) 17, 299, 388, 493
NspI RCATGY 1 cut(s) 275
PagI TCATGA 1 cut(s) 276
PauI GCGCGC 1 cut(s) 163
PdiI GCCGGC 1 cut(s) 169
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 3 cut(s) 155, 179, 236
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 197
PspEI GGTNACC 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 394
PteI GCGCGC 1 cut(s) 163
SatI GCNGC 3 cut(s) 154, 178, 235
Sau3AI GATC 2 cut(s) 371, 479
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 187, 225
SetI ASST 7 cut(s) 155, 199, 204, 215, 258, 312, 477
SfcI CTRYAG 1 cut(s) 319
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 55, 126
SmoI CTYRAG 2 cut(s) 55, 126
Sse9I AATT 2 cut(s) 113, 280
SsiI CCGC 3 cut(s) 109, 177, 183
StyD4I CCNGG 2 cut(s) 185, 223
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 117, 258
TasI AATT 2 cut(s) 113, 280
TauI GCSGC 1 cut(s) 180
TscAI CASTG 2 cut(s) 53, 342
TseFI GTSAC 4 cut(s) 17, 299, 388, 493
TseI GCWGC 2 cut(s) 153, 234
Tsp45I GTSAC 4 cut(s) 17, 299, 388, 493
TspDTI ATGAA 2 cut(s) 133, 293
TspRI CASTG 2 cut(s) 53, 342
Tth111I GACNNNGTC 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.