Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003734

Physical Location & Seq

Genomic Coordinates Reverse (-)

12460303 .. 12462999

Gene Structure 2697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTGAGAGTCAGCGTTTTGAATGATGCTCTAAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAAATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTACAGATGGAACTATTGATTTTGGATTATCTATTTTCTTGAAGCCAGGAGAAAAGTTTACTGATGTGGTAGGGAGCCCATATTATGTCGCTCTAGAAGTCTTACGAAAGCGTTATGGTCCAGAAGCAGATGTTTGGAGCGCTGGAGTGATTCTTTATATTTTATTAAGTGGGGTACCTCCATTTTGGGCTGAAACGGAGCAAGGAATATTTGATCAGGTCTTGCATGGTGAGCTAGACTTTTCATCAGATCCCTGGCCTAGTATCTCTGACGGTGCCAAAGATTTAGTAAGGAGAATGCTTGTCCGAGACCCCAGAAAGCGGCTGACTGCACACGAAGTTTTGTGTGAGTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

7.75

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	7 - 76	1.3e-10	Ribosomal protein S8
Pkinase	PF00069	87 - 200	9.1e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07770 AT1G07770 AT1G07770 AT3G46040 AT5G59850
fragaria_vesca	FvH4_3g35110
rosa_chinensis	RchiOBHm_Chr1g0317511 RchiOBHm_Chr1g0324641 RchiOBHm_Chr1g0365891 RchiOBHm_Chr3g0472351 RchiOBHm_Chr5g0063111 RchiOBHm_Chr7g0183941
rosa_laevigata	RLG00000027380
rosa_multiflora	Rmu_sc0002438.1_g000009
rosa_roxburghii	Rroxscaffold_4G00290750 Rroxscaffold_6G00400830
rosa_rugosa	Rorug01G0325300 Rorug01G0325400 Rorug05G0080600 Rorug05G0354300
rosa_samantha	Rh1BG295000 Rh3DG172800 Rh4BG188200 Rh5CG453100
rosa_wichuraiana	Rw0G004860 Rw0G014020 Rw1G029670 Rw2G018770 Rw2G029840 Rw4G014240 Rw4G021200 Rw5G038980 Rw7G013420 Rw7G041620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	418
AccB1I	GGYRCC	2 cut(s)	418, 518
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	488
AfaI	GTAC	3 cut(s)	44, 247, 420
AfeI	AGCGCT	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	22, 191, 286
AjnI	CCWGG	2 cut(s)	289, 497
AluBI	AGCT	1 cut(s)	478
AluI	AGCT	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	61, 546
AlwI	GGATC	1 cut(s)	488
Aor51HI	AGCGCT	1 cut(s)	385
AoxI	GGCC	2 cut(s)	83, 500
Asp718I	GGTACC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	16, 485
AvaII	GGWCC	1 cut(s)	362
BanI	GGYRCC	2 cut(s)	418, 518
BanII	GRGCYC	1 cut(s)	323
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	291, 499
BclI	TGATCA	2 cut(s)	78, 457
BcoDI	GTCTC	2 cut(s)	61, 546
BfaI	CTAG	3 cut(s)	338, 479, 504
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	567
Bme1390I	CCNGG	2 cut(s)	291, 499
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	320, 420, 520
BmrFI	CCNGG	2 cut(s)	291, 499
BmsI	GCATC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	93, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	291, 499
BseDI	CCNNGG	2 cut(s)	93, 497
BseLI	CCNNNNNNNGG	1 cut(s)	564
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	85, 502
BshNI	GGYRCC	2 cut(s)	418, 518
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	2 cut(s)	61, 546
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	85, 502
Bso31I	GGTCTC	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	78, 457, 493
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	2 cut(s)	85, 502
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	320, 420, 520
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	2 cut(s)	418, 518
BspTNI	GGTCTC	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	93, 497
BssMI	GATC	3 cut(s)	78, 457, 493
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	291, 499
Bst4CI	ACNGT	2 cut(s)	134, 518
Bst6I	CTCTTC	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	3 cut(s)	81, 460, 496
BstMAI	GTCTC	2 cut(s)	61, 546
BstMBI	GATC	3 cut(s)	78, 457, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	2 cut(s)	291, 499
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	289, 497
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	85, 502
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	3 cut(s)	43, 246, 419
CviAII	CATG	3 cut(s)	40, 76, 470
CviJI	RGCY	8 cut(s)	85, 205, 289, 321, 434, 478, 502, 568
CviKI_1	RGCY	8 cut(s)	85, 205, 289, 321, 434, 478, 502, 568
CviQI	GTAC	3 cut(s)	43, 246, 419
DpnI	GATC	3 cut(s)	80, 459, 495
DpnII	GATC	3 cut(s)	78, 457, 493
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	362
Eco47III	AGCGCT	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	289, 497
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	43, 79, 473
FatI	CATG	3 cut(s)	39, 75, 469
FbaI	TGATCA	2 cut(s)	78, 457
Fnu4HI	GCNGC	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	566
FspBI	CTAG	3 cut(s)	338, 479, 504
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	85, 502
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	43, 79, 473
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	9, 394, 593
HphI	GGTGA	2 cut(s)	16, 485
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	493, 514, 551
Hpy188III	TCNNGA	5 cut(s)	76, 174, 283, 338, 365
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	134, 518
HpyCH4V	TGCA	3 cut(s)	124, 469, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
Hsp92II	CATG	3 cut(s)	43, 79, 473
HspAI	GCGC	1 cut(s)	384
KpnI	GGTACC	1 cut(s)	422
Ksp22I	TGATCA	2 cut(s)	78, 457
Kzo9I	GATC	3 cut(s)	78, 457, 493
LmnI	GCTCC	3 cut(s)	318, 381, 442
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	3 cut(s)	338, 479, 504
MalI	GATC	3 cut(s)	80, 459, 495
MboI	GATC	3 cut(s)	78, 457, 493
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	18, 602
MnlI	CCTC	4 cut(s)	51, 195, 240, 432
MseI	TTAA	2 cut(s)	410, 601
MspR9I	CCNGG	2 cut(s)	291, 499
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	2 cut(s)	291, 499
MwoI	GCNNNNNNNGC	1 cut(s)	475
NdeII	GATC	3 cut(s)	78, 457, 493
NlaIII	CATG	3 cut(s)	43, 79, 473
NlaIV	GGNNCC	3 cut(s)	320, 420, 520
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	567
PleI	GAGTC	2 cut(s)	17, 601
PpsI	GAGTC	2 cut(s)	17, 601
Psp6I	CCWGG	2 cut(s)	289, 497
PspGI	CCWGG	2 cut(s)	289, 497
PspN4I	GGNNCC	3 cut(s)	320, 420, 520
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	3 cut(s)	44, 247, 420
RsaNI	GTAC	3 cut(s)	43, 246, 419
SaqAI	TTAA	2 cut(s)	410, 601
SatI	GCNGC	1 cut(s)	566
Sau3AI	GATC	3 cut(s)	78, 457, 493
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	18, 602
ScrFI	CCNGG	2 cut(s)	291, 499
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	5 cut(s)	75, 99, 424, 465, 480
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	3 cut(s)	338, 479, 504
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	289, 497
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	134, 518
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	410, 601
Tru9I	TTAA	2 cut(s)	410, 601
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	3 cut(s)	338, 479, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.