Rroxscaffold_4G00290750

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003734
Physical Location & Seq
Reverse (-)
11279243 .. 11281155
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290750.1

Sequence Viewer

Length: 393 bp
ATGGTGAGAGTTAGCGTGCTGAATGATGCTCTGAAGAGCATGTACAATGCAGAGAAACGTGGTAAGCGTCAGGTGATGATCAGGCCGTCATCCAAAGTGATCATCAAGTTCCTTATTGTCATGCAAAAGCATGGATACATTGGAGAGTTCGAGTATGTTGACGACCACAGGTCTGGTAAAATTGTGGTCGAACTTAATGGAAGGCTTAACAAGTGTGGGGTCATTAGTCCTCGTTTTGATGTTGGTGTTAAGGAGATTGAAGGTTGGACTGCCAGGTTGCTTCCTTCAAGACAGTTTGGATATATCGTGCTCACCACTTCTGCTGGCATCATGGACCATGAAGAGGCTAGAAGAAAGAATGTCGGTGGGAAAGTTCTTGGTTTCTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

9.89

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.8e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 260, 288
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 272
Alw21I GWGCWC 1 cut(s) 312
AoxI GGCC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 16, 85, 304
AvaII GGWCC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
Bbv12I GWGCWC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 274
BciVI GTATCC 1 cut(s) 128
BclI TGATCA 2 cut(s) 78, 99
BfaI CTAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 334
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 16, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 343
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 343
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 99
BspANI GGCC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 78, 99
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 29, 336
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 17, 325
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 81, 102
BstMBI GATC 2 cut(s) 78, 99
BstNI CCWGG 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 17, 325
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 43
CviAII CATG 5 cut(s) 40, 121, 131, 331, 338
CviJI RGCY 3 cut(s) 85, 205, 347
CviKI_1 RGCY 3 cut(s) 85, 205, 347
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 101
DpnII GATC 2 cut(s) 78, 99
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 29, 336
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 2 cut(s) 29, 336
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 272
FaeI CATG 5 cut(s) 43, 124, 134, 334, 341
FaiI YATR 7 cut(s) 41, 122, 132, 156, 303, 332, 339
FatI CATG 5 cut(s) 39, 120, 130, 330, 337
FbaI TGATCA 2 cut(s) 78, 99
FokI GGATG 1 cut(s) 76
FspBI CTAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 56
Hin1II CATG 5 cut(s) 43, 124, 134, 334, 341
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HphI GGTGA 3 cut(s) 16, 85, 304
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 195, 254, 294
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 50, 124
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 5 cut(s) 43, 124, 134, 334, 341
Ksp22I TGATCA 2 cut(s) 78, 99
Kzo9I GATC 2 cut(s) 78, 99
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 56, 67, 154, 159, 259, 286, 309
LweI GCATC 2 cut(s) 16, 336
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 58
MalI GATC 2 cut(s) 80, 101
MboI GATC 2 cut(s) 78, 99
MboII GAAGA 3 cut(s) 46, 353, 363
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 2 cut(s) 240, 337
MseI TTAA 3 cut(s) 195, 207, 249
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
NdeII GATC 2 cut(s) 78, 99
NlaIII CATG 5 cut(s) 43, 124, 134, 334, 341
NspI RCATGY 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 195, 207, 249
Sau3AI GATC 2 cut(s) 78, 99
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 312
SetI ASST 5 cut(s) 61, 75, 173, 265, 278
SfaNI GCATC 2 cut(s) 16, 336
SinI GGWCC 1 cut(s) 334
Sse9I AATT 1 cut(s) 180
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 150, 189
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 3 cut(s) 195, 207, 249
Tru9I TTAA 3 cut(s) 195, 207, 249
TspDTI ATGAA 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 334
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.