Rw4G014240

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003734
Physical Location & Seq
Forward (+)
33093353 .. 33094139
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014240.1

Sequence Viewer

Length: 348 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATACATTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

9.69

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 112 1.3e-13 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 191, 260
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BceAI ACGGC 1 cut(s) 285
BciVI GTATCC 2 cut(s) 293, 328
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 273
BfuI GTATCC 2 cut(s) 293, 328
BglII AGATCT 1 cut(s) 170
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 170
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 78, 170
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 2 cut(s) 81, 173
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 78, 170
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuI GTATCC 2 cut(s) 293, 328
BsuRI GGCC 1 cut(s) 85
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 40, 76, 331
CviJI RGCY 4 cut(s) 85, 205, 264, 272
CviKI_1 RGCY 4 cut(s) 85, 205, 264, 272
CviQI GTAC 1 cut(s) 43
DpnI GATC 2 cut(s) 80, 172
DpnII GATC 2 cut(s) 78, 170
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 43, 79, 334
FaiI YATR 6 cut(s) 41, 77, 122, 138, 156, 332
FatI CATG 3 cut(s) 39, 75, 330
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 3 cut(s) 43, 79, 334
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 9, 327
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 76, 174, 288
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 96, 254
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 3 cut(s) 43, 79, 334
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 170
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 56, 67, 159, 250, 309
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 273
MalI GATC 2 cut(s) 80, 172
MboI GATC 2 cut(s) 78, 170
MboII GAAGA 3 cut(s) 46, 67, 272
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 51, 195, 240
NdeII GATC 2 cut(s) 78, 170
NlaIII CATG 3 cut(s) 43, 79, 334
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 327
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 78, 170
SchI GAGTC 1 cut(s) 18
SetI ASST 2 cut(s) 75, 99
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 134, 294
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 273
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.