AT5G59850

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003734
Physical Location & Seq
Reverse (-)
24112156 .. 24113617
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59850.1

Sequence Viewer

Length: 393 bp
ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGATGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAATGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.89

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.8e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 272
AciI CCGC 1 cut(s) 270
AfaI GTAC 3 cut(s) 44, 155, 302
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 2 cut(s) 169, 273
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
AoxI GGCC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspS9I GGNCC 2 cut(s) 267, 334
AsuHPI GGTGA 2 cut(s) 16, 155
AvaII GGWCC 2 cut(s) 267, 334
BbsI GAAGAC 2 cut(s) 208, 269
BciT130I CCWGG 1 cut(s) 349
BclI TGATCA 2 cut(s) 78, 99
BfrI CTTAAG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 2 cut(s) 267, 334
BmeRI GACNNNNNGTC 2 cut(s) 169, 273
BmgT120I GGNCC 2 cut(s) 267, 334
BmrFI CCNGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 2 cut(s) 208, 269
BsaJI CCNNGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 85
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 78, 99, 180
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 3 cut(s) 78, 99, 180
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 2 cut(s) 50, 59
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 3 cut(s) 81, 102, 183
BstMBI GATC 3 cut(s) 78, 99, 180
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstV2I GAAGAC 2 cut(s) 208, 269
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 19
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 267, 334
Csp6I GTAC 3 cut(s) 43, 154, 301
CviAII CATG 2 cut(s) 76, 121
CviJI RGCY 6 cut(s) 85, 193, 264, 323, 347, 381
CviKI_1 RGCY 6 cut(s) 85, 193, 264, 323, 347, 381
CviQI GTAC 3 cut(s) 43, 154, 301
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 80, 101, 182
DpnII GATC 3 cut(s) 78, 99, 180
DriI GACNNNNNGTC 2 cut(s) 169, 273
Eam1104I CTCTTC 2 cut(s) 50, 59
Eam1105I GACNNNNNGTC 2 cut(s) 169, 273
EarI CTCTTC 2 cut(s) 50, 59
Eco147I AGGCCT 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 267, 334
EcoRII CCWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 79, 124
FaiI YATR 4 cut(s) 41, 77, 122, 332
FatI CATG 2 cut(s) 75, 120
FbaI TGATCA 2 cut(s) 78, 99
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 2 cut(s) 79, 124
HinfI GANTC 2 cut(s) 9, 219
HphI GGTGA 2 cut(s) 16, 155
Hpy188III TCNNGA 3 cut(s) 76, 174, 288
HpyAV CCTTC 3 cut(s) 96, 254, 294
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 79, 124
Ksp22I TGATCA 2 cut(s) 78, 99
Kzo9I GATC 3 cut(s) 78, 99, 180
LpnPI CCDG 8 cut(s) 67, 154, 159, 250, 301, 309, 334, 361
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 80, 101, 182
MbiI CCGCTC 1 cut(s) 272
MboI GATC 3 cut(s) 78, 99, 180
MboII GAAGA 6 cut(s) 67, 76, 213, 269, 272, 353
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 5 cut(s) 53, 60, 100, 240, 328
MseI TTAA 5 cut(s) 21, 33, 195, 207, 249
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
NdeII GATC 3 cut(s) 78, 99, 180
NlaIII CATG 2 cut(s) 79, 124
NmeAIII GCCGAG 1 cut(s) 299
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 9
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspPI GGNCC 2 cut(s) 267, 334
RsaI GTAC 3 cut(s) 44, 155, 302
RsaNI GTAC 3 cut(s) 43, 154, 301
SaqAI TTAA 5 cut(s) 21, 33, 195, 207, 249
Sau3AI GATC 3 cut(s) 78, 99, 180
Sau96I GGNCC 2 cut(s) 267, 334
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 1 cut(s) 349
SetI ASST 5 cut(s) 159, 173, 195, 320, 375
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 2 cut(s) 267, 334
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 270
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 134, 294
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 189, 237
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 5 cut(s) 21, 33, 195, 207, 249
Tru9I TTAA 5 cut(s) 21, 33, 195, 207, 249
TscAI CASTG 1 cut(s) 19
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 267, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.