AT3G46040

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003734
Physical Location & Seq
Forward (+)
16914525 .. 16915837
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46040.1

Sequence Viewer

Length: 393 bp
ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGAGGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTCATGCAAAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGATGTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGGTTTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAACGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

9.94

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 6.6e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 277
AciI CCGC 1 cut(s) 323
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 342
AfaI GTAC 1 cut(s) 44
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 2 cut(s) 169, 273
AluBI AGCT 2 cut(s) 193, 347
AluI AGCT 2 cut(s) 193, 347
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 1 cut(s) 342
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 20, 258
BclI TGATCA 1 cut(s) 78
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 61
BmeRI GACNNNNNGTC 2 cut(s) 169, 273
Bpu10I CCTNAGC 1 cut(s) 319
BseGI GGATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 21
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 78, 334
BspACI CCGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 2 cut(s) 78, 334
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 2 cut(s) 81, 337
BstMBI GATC 2 cut(s) 78, 334
BstXI CCANNNNNNTGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 61
CciI TCATGA 1 cut(s) 337
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 121, 331, 338
CviJI RGCY 4 cut(s) 85, 193, 205, 347
CviKI_1 RGCY 4 cut(s) 85, 193, 205, 347
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 319
DpnI GATC 2 cut(s) 80, 336
DpnII GATC 2 cut(s) 78, 334
DriI GACNNNNNGTC 2 cut(s) 169, 273
Eam1104I CTCTTC 1 cut(s) 50
Eam1105I GACNNNNNGTC 2 cut(s) 169, 273
EarI CTCTTC 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 85
FaeI CATG 3 cut(s) 124, 334, 341
FaiI YATR 6 cut(s) 41, 77, 122, 156, 332, 339
FatI CATG 3 cut(s) 120, 330, 337
FauI CCCGC 1 cut(s) 316
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 277
FokI GGATG 1 cut(s) 276
FspBI CTAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 3 cut(s) 124, 334, 341
HinfI GANTC 2 cut(s) 9, 327
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 288, 338
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 96, 195, 254, 294
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 2 cut(s) 50, 124
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 3 cut(s) 124, 334, 341
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 334
LpnPI CCDG 5 cut(s) 56, 67, 154, 159, 301
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 80, 336
MboI GATC 2 cut(s) 78, 334
MboII GAAGA 3 cut(s) 67, 81, 353
MhlI GDGCHC 1 cut(s) 21
MnlI CCTC 4 cut(s) 53, 60, 240, 328
MseI TTAA 3 cut(s) 33, 195, 249
MspA1I CMGCKG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 32
NdeII GATC 2 cut(s) 78, 334
NlaIII CATG 3 cut(s) 124, 334, 341
PagI TCATGA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 2 cut(s) 9, 327
Psp1406I AACGTT 1 cut(s) 360
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 33, 195, 249
Sau3AI GATC 2 cut(s) 78, 334
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 75, 173, 195, 320, 349, 363
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 323
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 85
TaaI ACNGT 2 cut(s) 134, 294
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 237
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 2 cut(s) 9, 327
Tru1I TTAA 3 cut(s) 33, 195, 249
Tru9I TTAA 3 cut(s) 33, 195, 249
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 292, 354
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.