RchiOBHm_Chr5g0063111

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003734
Physical Location & Seq
Reverse (-)
68858706 .. 68860496
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33925

Sequence Viewer

Length: 393 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCCGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCTAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATCGGAGAGTTTGAGTATGTTGATGACCATAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACTGCTAGGCTTCTTCCTTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTTCTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

9.89

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 130 1.8e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 4 cut(s) 22, 191, 260, 288
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 342
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 338
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 273, 348
BfuI GTATCC 1 cut(s) 293
BglII AGATCT 1 cut(s) 170
BmsI GCATC 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 57
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 78, 170, 334
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssMI GATC 3 cut(s) 78, 170, 334
BssSI CACGAG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 134, 294
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 93
BstKTI GATC 3 cut(s) 81, 173, 337
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 78, 170, 334
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 170
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 85
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 40, 76, 331
CviJI RGCY 5 cut(s) 85, 205, 264, 277, 347
CviKI_1 RGCY 5 cut(s) 85, 205, 264, 277, 347
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 93
DpnI GATC 3 cut(s) 80, 172, 336
DpnII GATC 3 cut(s) 78, 170, 334
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 53
FaeI CATG 3 cut(s) 43, 79, 334
FaiI YATR 7 cut(s) 41, 77, 122, 138, 156, 168, 332
FatI CATG 3 cut(s) 39, 75, 330
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 2 cut(s) 273, 348
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 3 cut(s) 43, 79, 334
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 9, 327
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 33, 143
Hpy188III TCNNGA 4 cut(s) 76, 174, 288, 338
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 3 cut(s) 96, 254, 294
HpyCH4III ACNGT 2 cut(s) 134, 294
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 43, 79, 334
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 170, 334
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 56, 67, 159, 250, 309
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 273, 348
MalI GATC 3 cut(s) 80, 172, 336
MboI GATC 3 cut(s) 78, 170, 334
MboII GAAGA 3 cut(s) 46, 67, 272
MflI RGATCY 1 cut(s) 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 51, 195, 240, 334
NdeII GATC 3 cut(s) 78, 170, 334
NlaIII CATG 3 cut(s) 43, 79, 334
NmeAIII GCCGAG 1 cut(s) 76
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 327
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 78, 170, 334
SchI GAGTC 1 cut(s) 18
SetI ASST 4 cut(s) 75, 99, 349, 375
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 2 cut(s) 273, 348
StuI AGGCCT 1 cut(s) 85
TaaI ACNGT 2 cut(s) 134, 294
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 327
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 273, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.