RchiOBHm_Chr1g0317511

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003734
Physical Location & Seq
Reverse (-)
5049569 .. 5050806
1238 bp
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UTR
Exon/CDS
Intron
PRQ54783

Sequence Viewer

Length: 396 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAGAGAAGAGGGGCAAGAGACAGGTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTCTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGGGTTATCAGTCATCGCTTTAATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGGATACATTGTGTTGACAACATCTGCTGGAATCATGGATCACGAGGAAGCTAGGAGAAAGAATGTTGGTGGCAAGGTTCTCGGTTACTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

131

Amino Acids

14.93

Weight (kDa)

9.95

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 131 4.5e-20 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 194, 263
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 345
AoxI GGCC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 341
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 276, 351
BfuI GTATCC 1 cut(s) 296
BglII AGATCT 1 cut(s) 173
BmsI GCATC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BshFI GGCC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 78, 173, 337
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 78, 173, 337
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 134, 297
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 3 cut(s) 81, 176, 340
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 78, 173, 337
BstNSI RCATGY 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 218
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 40, 76, 334
CviJI RGCY 5 cut(s) 85, 208, 267, 275, 350
CviKI_1 RGCY 5 cut(s) 85, 208, 267, 275, 350
CviQI GTAC 1 cut(s) 43
DpnI GATC 3 cut(s) 80, 175, 339
DpnII GATC 3 cut(s) 78, 173, 337
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 43, 79, 337
FaiI YATR 6 cut(s) 41, 77, 122, 141, 159, 335
FatI CATG 3 cut(s) 39, 75, 333
FbaI TGATCA 1 cut(s) 78
FspBI CTAG 2 cut(s) 276, 351
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 3 cut(s) 43, 79, 337
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 2 cut(s) 9, 330
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 4 cut(s) 76, 177, 291, 341
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 2 cut(s) 96, 257
HpyCH4III ACNGT 2 cut(s) 134, 297
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 3 cut(s) 43, 79, 337
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 173, 337
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 56, 67, 162, 253, 312
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 276, 351
MaeIII GTNAC 1 cut(s) 383
MalI GATC 3 cut(s) 80, 175, 339
MboI GATC 3 cut(s) 78, 173, 337
MboII GAAGA 3 cut(s) 46, 67, 275
MflI RGATCY 1 cut(s) 173
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 3 cut(s) 51, 198, 337
MseI TTAA 1 cut(s) 240
NdeII GATC 3 cut(s) 78, 173, 337
NlaIII CATG 3 cut(s) 43, 79, 337
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 330
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 78, 173, 337
SchI GAGTC 1 cut(s) 18
SetI ASST 4 cut(s) 75, 99, 352, 378
SfaNI GCATC 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 2 cut(s) 276, 351
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 134, 297
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 276
XceI RCATGY 1 cut(s) 43
XspI CTAG 2 cut(s) 276, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.