Rorug01G0325300

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003734
Physical Location & Seq
Reverse (-)
44453834 .. 44457925
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0325300.1

Sequence Viewer

Length: 1125 bp
ATGATGATGATGATGATGAGCAGCGGCCGCATCACACTTCCTAAGGGTTTCCGATTCCGGCCCTCCGATGAGGAGCTGCTGAGTCATTACTTGGAGAAGAAGAATCAGCGCAAGGATCCCGAAATGGAGGCCATCATCCCTGAAATCAATGTGTGCGAGCACGAGCCTCGCGACTTACCAGCCCTGGTGTTCACAAGGGCGGTATTTCTGGACAAGGAGTGGTTCACCATGGCGGACTCTCCGGACATGGAGTGGTACTTCTTCAGTCCGCGAGTTTTTAAACACAGCAAAAGAAAAAGCACTCGGTCCAACAGGACCACGGAGGAAGGCTACTGGAAGAAGCAAGGCAAGGACCGCAGAATCACTCAGGCACGTTCTGATAAGCAGATCGGGGGGAAGAGGATCTTGACCTTCTACCAAACTGGAGTGCAGAAAAAACAGAAGACTGACTGGGTTATTCATGAGTATTATCTCACTAAGGCCGATTCTAATGAGCAGATTGGGGACTTTGTTCTCTGCCGCTTGAAGAAAAAGGCCGACAAGTCTGATTCCGATATGGTTGGAGAGCTACTTGATGAGCCAGGAAATCAACCTCCGCCACCTCAACTGCAGTCACCAATAAAGTTGGGTAATGTTTCACACACCACCAATGTCCATATTGATGAATGTCGTAAGAGGAAATATCAATTTGCGGATAATGACTCTTCTCCTACTAAAAATAATCATATTTCAACCAATGATGTTGATGAACTAGTTAACAACACTTCATCTTATTCTGAAAGTCATGCTGCAGATGCTATTCCAAAGGAGTATTCTCAACCAGGAGAAAATCTGGGATCTAATTCAATATTTCAGTCACTGGAACCACTATCAGTATTGACTCTTCTCTCTAAAAGTTCTCAGATACAGATATTGATGGAGGTAGCAGTGACAGAAACACCAAAGTCGTCTATGGATCGTCATGGGGTCAAACATGGGAGGTGCTCCAAGAAGACTCCAACTGCAGAGCAGCATCACAAGCCAAGGTCAGTGAAGCTGCAGAGGCATTATATTGCTGTTCATCTGCCCCAGAAGAAACTGAAAGTCCTGGAAGCAGACAACAGTTCGAAGCTGGCAACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

374

Amino Acids

42.93

Weight (kDa)

9.14

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 157 1.6e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 171, 271
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 9 cut(s) 24, 28, 200, 233, 269, 355, 520, 596, 692
AclWI GGATC 5 cut(s) 110, 123, 410, 844, 963
AcoI YGGCCR 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 247
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 3 cut(s) 526, 732, 846
AhlI ACTAGT 1 cut(s) 751
AjnI CCWGG 4 cut(s) 183, 580, 820, 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 796, 828
AluBI AGCT 4 cut(s) 76, 568, 1036, 1111
AluI AGCT 4 cut(s) 76, 568, 1036, 1111
Alw21I GWGCWC 2 cut(s) 162, 986
AlwI GGATC 5 cut(s) 110, 123, 410, 844, 963
AlwNI CAGNNNCTG 1 cut(s) 859
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 5 cut(s) 25, 59, 129, 480, 534
ApeKI GCWGC 5 cut(s) 21, 76, 788, 1009, 1036
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 60, 306, 315, 352
AsuHPI GGTGA 2 cut(s) 217, 606
AsuII TTCGAA 1 cut(s) 1106
AvaII GGWCC 3 cut(s) 306, 315, 352
AxyI CCTNAGG 1 cut(s) 42
BamHI GGATCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 867, 899
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 449, 998
Bbv12I GWGCWC 2 cut(s) 162, 986
BbvI GCAGC 5 cut(s) 33, 63, 775, 1021, 1023
BccI CCATC 2 cut(s) 140, 910
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 4 cut(s) 185, 582, 822, 1088
BcuI ACTAGT 1 cut(s) 751
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 4 cut(s) 608, 789, 1002, 1037
BisI GCNGC 8 cut(s) 22, 25, 28, 77, 520, 789, 1010, 1037
BlsI GCNGC 8 cut(s) 23, 26, 29, 78, 521, 790, 1011, 1038
Bme1390I CCNGG 4 cut(s) 185, 582, 822, 1088
Bme18I GGWCC 3 cut(s) 306, 315, 352
BmgT120I GGNCC 4 cut(s) 60, 306, 315, 352
BmiI GGNNCC 2 cut(s) 117, 864
BmrFI CCNGG 4 cut(s) 185, 582, 822, 1088
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 39, 784, 1021
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 449, 998
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 1106
BsaJI CCNNGG 4 cut(s) 183, 228, 318, 1022
BsaWI WCCGGW 1 cut(s) 241
Bse1I ACTGG 4 cut(s) 338, 427, 455, 864
Bse21I CCTNAGG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 4 cut(s) 185, 582, 822, 1088
BseDI CCNNGG 4 cut(s) 183, 228, 318, 1022
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 71, 380, 914
BseNI ACTGG 4 cut(s) 338, 427, 455, 864
BseRI GAGGAG 1 cut(s) 86
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 5 cut(s) 33, 63, 775, 1021, 1023
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 2 cut(s) 171, 271
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 27, 61, 131, 482, 536
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 162, 986
BsiSI CCGG 2 cut(s) 58, 242
BslFI GGGAC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 5 cut(s) 27, 61, 131, 482, 536
Bsp119I TTCGAA 1 cut(s) 1106
Bsp1286I GDGCHC 2 cut(s) 162, 986
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 5 cut(s) 115, 387, 402, 836, 955
Bsp19I CCATGG 1 cut(s) 228
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 9 cut(s) 24, 28, 200, 233, 269, 355, 520, 596, 692
BspANI GGCC 5 cut(s) 27, 61, 131, 482, 536
BspCNI CTCAG 3 cut(s) 72, 379, 913
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 171, 271
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 117, 864
BspMAI CTGCAG 4 cut(s) 612, 793, 1006, 1041
BspPI GGATC 5 cut(s) 110, 123, 410, 844, 963
BspT104I TTCGAA 1 cut(s) 1106
BsrI ACTGG 4 cut(s) 338, 427, 455, 864
BssECI CCNNGG 4 cut(s) 183, 228, 318, 1022
BssMI GATC 5 cut(s) 115, 387, 402, 836, 955
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 2 cut(s) 228, 1022
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 4 cut(s) 185, 582, 822, 1088
Bst4CI ACNGT 1 cut(s) 1103
Bst6I CTCTTC 3 cut(s) 392, 709, 888
BstBI TTCGAA 1 cut(s) 1106
BstC8I GCNNGC 2 cut(s) 158, 1113
BstDEI CTNAG 5 cut(s) 42, 80, 366, 477, 900
BstDSI CCRYGG 2 cut(s) 228, 318
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 171, 271
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 5 cut(s) 118, 390, 405, 839, 958
BstMBI GATC 5 cut(s) 115, 387, 402, 836, 955
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 5 cut(s) 27, 354, 794, 1018, 1042
BstNI CCWGG 4 cut(s) 185, 582, 822, 1088
BstSCI CCNGG 4 cut(s) 183, 580, 820, 1086
BstSFI CTRYAG 4 cut(s) 608, 789, 1002, 1037
BstUI CGCG 2 cut(s) 171, 271
BstV1I GCAGC 5 cut(s) 33, 63, 775, 1021, 1023
BstV2I GAAGAC 2 cut(s) 449, 998
BstX2I RGATCY 3 cut(s) 115, 402, 836
BstYI RGATCY 3 cut(s) 115, 402, 836
BstZI CGGCCG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 5 cut(s) 27, 61, 131, 482, 536
BtgI CCRYGG 2 cut(s) 228, 318
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 3 cut(s) 857, 933, 1035
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 158, 1113
CaiI CAGNNNCTG 1 cut(s) 859
CciI TCATGA 1 cut(s) 460
CciNI GCGGCCGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 4 cut(s) 60, 306, 315, 352
Csp6I GTAC 1 cut(s) 256
CviAII CATG 6 cut(s) 229, 247, 461, 785, 962, 974
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 5 cut(s) 42, 80, 366, 477, 900
DpnI GATC 5 cut(s) 117, 389, 404, 838, 957
DpnII GATC 5 cut(s) 115, 387, 402, 836, 955
DraI TTTAAA 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 3 cut(s) 392, 709, 888
EarI CTCTTC 3 cut(s) 392, 709, 888
EciI GGCGGA 2 cut(s) 248, 585
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 228, 1022
Eco47I GGWCC 3 cut(s) 306, 315, 352
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 42
EcoRII CCWGG 4 cut(s) 183, 580, 820, 1086
EcoT14I CCWWGG 2 cut(s) 228, 1022
ErhI CCWWGG 2 cut(s) 228, 1022
FaeI CATG 6 cut(s) 232, 250, 464, 788, 965, 977
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 518
FatI CATG 6 cut(s) 228, 246, 460, 784, 961, 973
Fnu4HI GCNGC 8 cut(s) 22, 25, 28, 77, 520, 789, 1010, 1037
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 8 cut(s) 22, 25, 28, 77, 520, 789, 1010, 1037
FspBI CTAG 1 cut(s) 752
GlaI GCGC 1 cut(s) 110
GluI GCNGC 8 cut(s) 22, 25, 28, 77, 520, 789, 1010, 1037
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 5 cut(s) 27, 61, 131, 482, 536
HapII CCGG 2 cut(s) 58, 242
HhaI GCGC 1 cut(s) 111
Hin1II CATG 6 cut(s) 232, 250, 464, 788, 965, 977
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 2 cut(s) 58, 242
HphI GGTGA 2 cut(s) 217, 606
Hpy166II GTNNAC 3 cut(s) 192, 225, 757
Hpy188I TCNGA 7 cut(s) 53, 67, 379, 547, 553, 778, 903
Hpy188III TCNNGA 6 cut(s) 119, 170, 209, 242, 406, 461
Hpy8I GTNNAC 3 cut(s) 192, 225, 757
HpyAV CCTTC 2 cut(s) 320, 421
HpyCH4III ACNGT 1 cut(s) 1103
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 430, 610, 791, 1004, 1039
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 354, 794, 1018, 1042
HpyF3I CTNAG 5 cut(s) 42, 80, 366, 477, 900
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 6 cut(s) 232, 250, 464, 788, 965, 977
HspAI GCGC 1 cut(s) 109
Kpn2I TCCGGA 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 115, 387, 402, 836, 955
LmnI GCTCC 2 cut(s) 73, 989
Lsp1109I GCAGC 5 cut(s) 33, 63, 775, 1021, 1023
LweI GCATC 3 cut(s) 39, 784, 1021
MaeI CTAG 1 cut(s) 752
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 612, 855, 928
MalI GATC 5 cut(s) 117, 389, 404, 838, 957
MboI GATC 5 cut(s) 115, 387, 402, 836, 955
MflI RGATCY 3 cut(s) 115, 402, 836
MhlI GDGCHC 2 cut(s) 162, 986
MluCI AATT 3 cut(s) 686, 841, 1119
MlyI GAGTC 5 cut(s) 91, 230, 695, 874, 988
MmeI TCCRAC 3 cut(s) 333, 541, 1022
MroI TCCGGA 1 cut(s) 241
MseI TTAA 3 cut(s) 279, 756, 1123
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 2 cut(s) 58, 242
MspR9I CCNGG 4 cut(s) 185, 582, 822, 1088
MvaI CCWGG 4 cut(s) 185, 582, 822, 1088
MvnI CGCG 2 cut(s) 171, 271
MwoI GCNNNNNNNGC 5 cut(s) 27, 354, 794, 1018, 1042
NcoI CCATGG 1 cut(s) 228
NdeII GATC 5 cut(s) 115, 387, 402, 836, 955
NlaIII CATG 6 cut(s) 232, 250, 464, 788, 965, 977
NlaIV GGNNCC 2 cut(s) 117, 864
NmuCI GTSAC 3 cut(s) 612, 855, 928
NotI GCGGCCGC 1 cut(s) 25
NruI TCGCGA 1 cut(s) 171
NspV TTCGAA 1 cut(s) 1106
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 5 cut(s) 54, 103, 360, 485, 548
PfoI TCCNGGA 1 cut(s) 1086
PkrI GCNGC 8 cut(s) 23, 26, 29, 78, 521, 790, 1011, 1038
PleI GAGTC 5 cut(s) 90, 230, 695, 874, 988
PpsI GAGTC 5 cut(s) 90, 230, 695, 874, 988
Psp6I CCWGG 4 cut(s) 183, 580, 820, 1086
PspGI CCWGG 4 cut(s) 183, 580, 820, 1086
PspN4I GGNNCC 2 cut(s) 117, 864
PspPI GGNCC 4 cut(s) 60, 306, 315, 352
PstI CTGCAG 4 cut(s) 612, 793, 1006, 1041
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 3 cut(s) 115, 402, 836
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 3 cut(s) 279, 756, 1123
SatI GCNGC 8 cut(s) 22, 25, 28, 77, 520, 789, 1010, 1037
Sau3AI GATC 5 cut(s) 115, 387, 402, 836, 955
Sau96I GGNCC 4 cut(s) 60, 306, 315, 352
SchI GAGTC 5 cut(s) 91, 230, 695, 874, 988
ScrFI CCNGG 4 cut(s) 185, 582, 822, 1088
SduI GDGCHC 2 cut(s) 162, 986
SfaNI GCATC 3 cut(s) 39, 784, 1021
SfcI CTRYAG 4 cut(s) 608, 789, 1002, 1037
SfuI TTCGAA 1 cut(s) 1106
SinI GGWCC 3 cut(s) 306, 315, 352
SmiMI CAYNNNNRTG 1 cut(s) 660
SpeI ACTAGT 1 cut(s) 751
Sse9I AATT 3 cut(s) 686, 841, 1119
SsiI CCGC 9 cut(s) 24, 28, 200, 233, 269, 355, 520, 596, 692
SspI AATATT 1 cut(s) 849
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 4 cut(s) 183, 580, 820, 1086
StyI CCWWGG 2 cut(s) 228, 1022
TaaI ACNGT 1 cut(s) 1103
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 1106
TaqII GACCGA 1 cut(s) 294
TasI AATT 3 cut(s) 686, 841, 1119
TauI GCSGC 3 cut(s) 27, 30, 522
TfiI GAWTC 5 cut(s) 54, 103, 360, 485, 548
Tru1I TTAA 3 cut(s) 279, 756, 1123
Tru9I TTAA 3 cut(s) 279, 756, 1123
TscAI CASTG 3 cut(s) 864, 933, 1035
TseFI GTSAC 3 cut(s) 612, 855, 928
TseI GCWGC 5 cut(s) 21, 76, 788, 1009, 1036
Tsp45I GTSAC 3 cut(s) 612, 855, 928
TspDTI ATGAA 5 cut(s) 449, 678, 756, 762, 1049
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 864, 933, 1035
VpaK11BI GGWCC 3 cut(s) 306, 315, 352
XspI CTAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.