AT1G09200

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000501
Physical Location & Seq
Reverse (-)
2971571 .. 2972334
764 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09200.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGGAAAGGCTCCAAGGAAGCAGCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACACAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGAGCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGTCAGAGAGATCGCTCAGGACTTCAAAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGCTTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACGATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 275
AccII CGCG 1 cut(s) 383
AciI CCGC 2 cut(s) 74, 273
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 2 cut(s) 263, 312
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 6 cut(s) 61, 181, 287, 296, 379, 407
AluI AGCT 6 cut(s) 61, 181, 287, 296, 379, 407
Alw21I GWGCWC 1 cut(s) 176
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 58, 287
AspLEI GCGC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 70, 274
BceAI ACGGC 2 cut(s) 36, 251
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 24
BisI GCNGC 4 cut(s) 59, 75, 273, 288
BlsI GCNGC 4 cut(s) 60, 76, 274, 289
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 50, 366
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 50, 366
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 168, 242
BseRI GAGGAG 2 cut(s) 117, 411
BseXI GCAGC 2 cut(s) 70, 274
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 4 cut(s) 36, 92, 99, 132
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 222, 244, 357
Bsp68I TCGCGA 1 cut(s) 383
BspACI CCGC 2 cut(s) 74, 273
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 169, 241
BspFNI CGCG 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 48
BspQI GCTCTTC 2 cut(s) 164, 282
BspT104I TTCGAA 1 cut(s) 315
BsrBI CCGCTC 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 50, 366
BssMI GATC 3 cut(s) 222, 244, 357
BssT1I CCWWGG 2 cut(s) 50, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 3 cut(s) 164, 282, 317
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 63, 381
BstDEI CTNAG 3 cut(s) 177, 228, 408
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 3 cut(s) 225, 247, 360
BstMBI GATC 3 cut(s) 222, 244, 357
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 70, 274
BstV2I GAAGAC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 174, 268
BtuMI TCGCGA 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 63, 381
CfoI GCGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 1 cut(s) 361
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 177, 228, 408
DpnI GATC 3 cut(s) 224, 246, 359
DpnII GATC 3 cut(s) 222, 244, 357
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 3 cut(s) 164, 282, 317
EarI CTCTTC 3 cut(s) 164, 282, 317
Eco130I CCWWGG 2 cut(s) 50, 366
Eco57I CTGAAG 2 cut(s) 263, 312
EcoT14I CCWWGG 2 cut(s) 50, 366
ErhI CCWWGG 2 cut(s) 50, 366
FaeI CATG 1 cut(s) 364
FaiI YATR 1 cut(s) 362
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 59, 75, 273, 288
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 59, 75, 273, 288
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 334
GluI GCNGC 4 cut(s) 59, 75, 273, 288
HaeIII GGCC 1 cut(s) 95
HapII CCGG 4 cut(s) 36, 92, 99, 132
HhaI GCGC 1 cut(s) 335
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 123, 309, 390
HpaII CCGG 4 cut(s) 36, 92, 99, 132
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 128, 218, 308, 395
Hpy188III TCNNGA 7 cut(s) 157, 205, 230, 256, 281, 355, 382
Hpy8I GTNNAC 1 cut(s) 194
Hpy99I CGWCG 2 cut(s) 272, 308
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 177, 228, 408
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 3 cut(s) 222, 244, 357
LguI GCTCTTC 2 cut(s) 164, 282
LmnI GCTCC 2 cut(s) 52, 94
Lsp1109I GCAGC 2 cut(s) 70, 274
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 224, 246, 359
MbiI CCGCTC 1 cut(s) 275
MboI GATC 3 cut(s) 222, 244, 357
MboII GAAGA 7 cut(s) 121, 181, 239, 269, 304, 329, 399
MhlI GDGCHC 1 cut(s) 176
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 7 cut(s) 32, 72, 95, 201, 311, 342, 389
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 36, 92, 99, 132
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 1 cut(s) 132
NdeII GATC 3 cut(s) 222, 244, 357
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 383
NspV TTCGAA 1 cut(s) 315
PciSI GCTCTTC 2 cut(s) 164, 282
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 2 cut(s) 123, 390
PkrI GCNGC 4 cut(s) 60, 76, 274, 289
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 61
RruI TCGCGA 1 cut(s) 383
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
RseI CAYNNNNRTG 1 cut(s) 359
SapI GCTCTTC 2 cut(s) 164, 282
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 4 cut(s) 59, 75, 273, 288
Sau3AI GATC 3 cut(s) 222, 244, 357
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 7 cut(s) 63, 183, 289, 298, 303, 381, 409
SfuI TTCGAA 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 359
SsiI CCGC 2 cut(s) 74, 273
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 50, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TauI GCSGC 2 cut(s) 77, 275
TfiI GAWTC 2 cut(s) 123, 390
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 181, 268
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 58, 287
Tsp45I GTSAC 1 cut(s) 352
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 181, 268
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.