AT3G27360

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000501
Physical Location & Seq
Reverse (-)
10129105 .. 10129937
833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27360.1

Sequence Viewer

Length: 411 bp
ATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATCTTAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCTTATTTGGTTGGATTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AclWI GGATC 2 cut(s) 181, 252
AcuI CTGAAG 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 98, 211
AgsI TTSAA 4 cut(s) 238, 281, 317, 377
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 9 cut(s) 23, 47, 89, 181, 196, 227, 275, 290, 296
AluI AGCT 9 cut(s) 23, 47, 89, 181, 196, 227, 275, 290, 296
AlwI GGATC 2 cut(s) 181, 252
ApeKI GCWGC 3 cut(s) 74, 272, 287
AsuHPI GGTGA 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 366
BbvI GCAGC 3 cut(s) 86, 284, 299
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 3 cut(s) 6, 24, 51
BisI GCNGC 3 cut(s) 75, 273, 288
BlsI GCNGC 3 cut(s) 76, 274, 289
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 324
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 211
Bse1I ACTGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 98, 211
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 117, 400
BseXI GCAGC 3 cut(s) 86, 284, 299
BsgI GTGCAG 1 cut(s) 285
BsiSI CCGG 2 cut(s) 36, 99
BslI CCNNNNNNNGG 2 cut(s) 98, 211
Bsp143I GATC 2 cut(s) 186, 244
BspPI GGATC 2 cut(s) 181, 252
BspQI GCTCTTC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 66
BssMI GATC 2 cut(s) 186, 244
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 248, 345, 366
BstKTI GATC 2 cut(s) 189, 247
BstMBI GATC 2 cut(s) 186, 244
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 86, 284, 299
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 366
CviAII CATG 1 cut(s) 341
DdeI CTNAG 3 cut(s) 248, 345, 366
DpnI GATC 2 cut(s) 188, 246
DpnII GATC 2 cut(s) 186, 244
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 75, 273, 288
Fsp4HI GCNGC 3 cut(s) 75, 273, 288
FspBI CTAG 3 cut(s) 6, 24, 51
GluI GCNGC 3 cut(s) 75, 273, 288
GsuI CTGGAG 1 cut(s) 75
HapII CCGG 2 cut(s) 36, 99
Hin1II CATG 1 cut(s) 344
HindIII AAGCTT 2 cut(s) 194, 294
HinfI GANTC 1 cut(s) 123
HpaII CCGG 2 cut(s) 36, 99
HphI GGTGA 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 158, 258
Hpy188III TCNNGA 5 cut(s) 205, 218, 230, 238, 281
Hpy99I CGWCG 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 248, 345, 366
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 2 cut(s) 186, 244
LguI GCTCTTC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 52, 94
LpnPI CCDG 7 cut(s) 47, 49, 105, 112, 117, 144, 218
Lsp1109I GCAGC 3 cut(s) 86, 284, 299
MaeI CTAG 3 cut(s) 6, 24, 51
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 144, 352
MalI GATC 2 cut(s) 188, 246
MboI GATC 2 cut(s) 186, 244
MboII GAAGA 3 cut(s) 121, 269, 329
MflI RGATCY 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 7 cut(s) 32, 95, 342, 378, 381, 389, 396
MseI TTAA 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 36, 99
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NdeII GATC 2 cut(s) 186, 244
NlaIII CATG 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 3 cut(s) 76, 274, 289
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 3 cut(s) 75, 273, 288
Sau3AI GATC 2 cut(s) 186, 244
ScrFI CCNGG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SspMI CTAG 3 cut(s) 6, 24, 51
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TseI GCWGC 3 cut(s) 74, 272, 287
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 116, 179, 257
Van91I CCANNNNNTGG 1 cut(s) 211
XspI CTAG 3 cut(s) 6, 24, 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.