Prupe.6G021100_v2.0.a1

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000501
Physical Location & Seq
Forward (+)
1715348 .. 1716101
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G021100.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACTAAGCAGACTGCCCGTAAGTCGACCGGAGGCAAAGCGCCACGTAAGCAGCTGGCCACGAAGGCTGCCCGTAAGTCAGCCCCGGCGACCGGAGGGGTGAAGAAACCTCACCGTTTCAGGCCAGGAACTGTGGCTCTGAGAGAGATCAGAAAGTACCAGAAGAGCACTGAGCTCCTGATCCGCAAGCTTCCATTTCAAAGGCTTGTGAGGGAGATCGCTCAGGATTTCAAGACCGATCTCCGGTTCCAAAGCAGCGCCGTGGCGGCGCTGCAGGAGGCGGCGGAAGCCTACTTGGTGGGTCTGTTCGAGGACACCAATCTCTGCGCCATTCATGCCAAGAGAGTCACCATTATGCCCAAGGACATCCAGCTCGCTCGTCGGATCAGAGGCGAGAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 4 cut(s) 190, 272, 287, 290
AclWI GGATC 2 cut(s) 181, 398
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 2 cut(s) 98, 249
AgsI TTSAA 2 cut(s) 206, 238
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 2 cut(s) 176, 183
AlwI GGATC 2 cut(s) 181, 398
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 2 cut(s) 63, 128
ApeKI GCWGC 4 cut(s) 58, 74, 261, 277
AspLEI GCGC 4 cut(s) 49, 266, 277, 335
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 110, 118, 346
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 176, 183
BbvI GCAGC 4 cut(s) 61, 70, 264, 273
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 3 cut(s) 50, 267, 278
BglI GCCNNNNNGGC 2 cut(s) 71, 272
BisI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
BlsI GCNGC 6 cut(s) 60, 76, 263, 274, 279, 289
Bme1390I CCNGG 2 cut(s) 92, 132
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 92, 132
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 90, 267, 366
BsaWI WCCGGW 3 cut(s) 35, 98, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 249
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 90, 267, 366
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 98, 249
BseMII CTCAG 3 cut(s) 137, 168, 242
BseXI GCAGC 4 cut(s) 61, 70, 264, 273
Bsh1285I CGRYCG 2 cut(s) 36, 99
BshFI GGCC 2 cut(s) 65, 130
BsiEI CGRYCG 2 cut(s) 36, 99
BsiHKAI GWGCWC 2 cut(s) 176, 183
BsiSI CCGG 4 cut(s) 36, 92, 99, 250
BslI CCNNNNNNNGG 2 cut(s) 98, 249
BsnI GGCC 2 cut(s) 65, 130
Bsp1286I GDGCHC 2 cut(s) 176, 183
Bsp143I GATC 5 cut(s) 153, 186, 222, 244, 390
BspACI CCGC 4 cut(s) 190, 272, 287, 290
BspANI GGCC 2 cut(s) 65, 130
BspCNI CTCAG 3 cut(s) 138, 169, 241
BspLI GGNNCC 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 2 cut(s) 181, 398
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 90, 267, 366
BssMI GATC 5 cut(s) 153, 186, 222, 244, 390
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 122, 139
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 63, 194, 381
BstDEI CTNAG 4 cut(s) 12, 146, 177, 228
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 372
BstH2I RGCGCY 3 cut(s) 50, 267, 278
BstHHI GCGC 4 cut(s) 49, 266, 277, 335
BstKTI GATC 5 cut(s) 156, 189, 225, 247, 393
BstMBI GATC 5 cut(s) 153, 186, 222, 244, 390
BstMCI CGRYCG 2 cut(s) 36, 99
BstMWI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 90, 130
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 4 cut(s) 61, 70, 264, 273
BsuRI GGCC 2 cut(s) 65, 130
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 63, 194, 381
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 4 cut(s) 49, 266, 277, 335
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 4 cut(s) 12, 146, 177, 228
DpnI GATC 5 cut(s) 155, 188, 224, 246, 392
DpnII GATC 5 cut(s) 153, 186, 222, 244, 390
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
GlaI GCGC 4 cut(s) 48, 265, 276, 334
GluI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
HaeII RGCGCY 3 cut(s) 50, 267, 278
HaeIII GGCC 2 cut(s) 65, 130
HapII CCGG 4 cut(s) 36, 92, 99, 250
HhaI GCGC 4 cut(s) 49, 266, 277, 335
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 47, 264, 275, 333
HinP1I GCGC 4 cut(s) 47, 264, 275, 333
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 351
HpaII CCGG 4 cut(s) 36, 92, 99, 250
HphI GGTGA 3 cut(s) 110, 118, 346
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 147, 158, 390, 395
Hpy188III TCNNGA 3 cut(s) 184, 230, 238
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 122, 139
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
HpyF3I CTNAG 4 cut(s) 12, 146, 177, 228
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 47, 264, 275, 333
Kzo9I GATC 5 cut(s) 153, 186, 222, 244, 390
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 4 cut(s) 61, 70, 264, 273
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 155, 188, 224, 246, 392
MboI GATC 5 cut(s) 153, 186, 222, 244, 390
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 2 cut(s) 176, 183
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 8 cut(s) 32, 95, 126, 210, 277, 310, 389, 396
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 36, 92, 99, 250
MspR9I CCNGG 2 cut(s) 92, 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
NciI CCSGG 1 cut(s) 92
NdeII GATC 5 cut(s) 153, 186, 222, 244, 390
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 164
PkrI GCNGC 6 cut(s) 60, 76, 263, 274, 279, 289
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 53
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 254
PstI CTGCAG 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
Sau3AI GATC 5 cut(s) 153, 186, 222, 244, 390
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 92, 132
SduI GDGCHC 2 cut(s) 176, 183
SetI ASST 6 cut(s) 55, 63, 118, 183, 198, 381
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 359
SsiI CCGC 4 cut(s) 190, 272, 287, 290
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 90, 130
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 122, 139
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 32, 315
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 2 cut(s) 275, 290
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 58, 74, 261, 277
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.