Rh5BG431900

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000501
Physical Location & Seq
Forward (+)
69629458 .. 69630462
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG431900.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACCAAGCAAACCGCCCGAAAATCCACCGGAGGAAAGGCTCCACGTAAGCAGCTGGCCACTAAGGCCGCCCGGAAGTCTGCTCCGGCGACCGGAGGAGTGAAGAAGCCCCACCGTTTCAGGCCCGGAACCGTCGCCCTCAGGGAGATCAGGAAGTACCAGAAGAGCACTGAGCTTCTGATCCGCAAGCTTCCATTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACTGACCTTCGCTTCCAGAGCAGCGCCGTGGCGGCGCTTCAGGAGGCGGCGGAGGCTTACTTGGTGGGTCTGTTTGAGGACACCAATCTGTGTGCCATTCATGCCAAGAGAGTGACCATTATGCCCAAGGATATTCAGCTTGCCAGGAGGATTAGGGGCGAGAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 21, 75, 190, 272, 287, 290
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AoxI GGCC 4 cut(s) 3, 63, 72, 128
ApeKI GCWGC 2 cut(s) 58, 261
AspLEI GCGC 2 cut(s) 266, 277
AspS9I GGNCC 2 cut(s) 4, 129
AsuC2I CCSGG 2 cut(s) 79, 132
AxyI CCTNAGG 1 cut(s) 146
BalI TGGCCA 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 70, 273
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 2 cut(s) 79, 132
BfoI RGCGCY 2 cut(s) 267, 278
BglI GCCNNNNNGGC 2 cut(s) 71, 272
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 3 cut(s) 79, 132, 385
BmgT120I GGNCC 2 cut(s) 4, 129
BmiI GGNNCC 2 cut(s) 48, 136
BmrFI CCNGG 3 cut(s) 79, 132, 385
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 267, 366
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 267, 366
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 160, 168, 242
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 70, 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 5, 65, 74, 130
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 5 cut(s) 36, 79, 92, 99, 132
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 4 cut(s) 5, 65, 74, 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 153, 186
BspACI CCGC 6 cut(s) 21, 75, 190, 272, 287, 290
BspANI GGCC 4 cut(s) 5, 65, 74, 130
BspCNI CTCAG 3 cut(s) 159, 169, 241
BspLI GGNNCC 2 cut(s) 48, 136
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 267, 366
BssMI GATC 2 cut(s) 153, 186
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 122, 139
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 63, 194, 381
BstDEI CTNAG 4 cut(s) 69, 146, 177, 228
BstDSI CCRYGG 1 cut(s) 267
BstH2I RGCGCY 2 cut(s) 267, 278
BstHHI GCGC 2 cut(s) 266, 277
BstKTI GATC 2 cut(s) 156, 189
BstMBI GATC 2 cut(s) 153, 186
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 5 cut(s) 71, 258, 272, 293, 341
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 77, 130, 383
BstV1I GCAGC 2 cut(s) 70, 273
Bsu36I CCTNAGG 1 cut(s) 146
BsuRI GGCC 4 cut(s) 5, 65, 74, 130
BtgI CCRYGG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 63, 194, 381
CfoI GCGC 2 cut(s) 266, 277
Cfr13I GGNCC 2 cut(s) 4, 129
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 4 cut(s) 69, 146, 177, 228
DpnI GATC 2 cut(s) 155, 188
DpnII GATC 2 cut(s) 153, 186
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 2 cut(s) 265, 276
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 2 cut(s) 267, 278
HaeIII GGCC 4 cut(s) 5, 65, 74, 130
HapII CCGG 5 cut(s) 36, 79, 92, 99, 132
HhaI GCGC 2 cut(s) 266, 277
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 2 cut(s) 264, 275
HinP1I GCGC 2 cut(s) 264, 275
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 5 cut(s) 36, 79, 92, 99, 132
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 122, 139
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 258, 272, 293, 341
HpyF3I CTNAG 4 cut(s) 69, 146, 177, 228
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 2 cut(s) 264, 275
Kzo9I GATC 2 cut(s) 153, 186
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 52, 94
Lsp1109I GCAGC 2 cut(s) 70, 273
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 155, 188
MboI GATC 2 cut(s) 153, 186
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 5 cut(s) 36, 79, 92, 99, 132
MspR9I CCNGG 3 cut(s) 79, 132, 385
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 5 cut(s) 71, 258, 272, 293, 341
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 2 cut(s) 153, 186
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 136
NmuCI GTSAC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Ppu21I YACGTR 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 48, 136
PspPI GGNCC 2 cut(s) 4, 129
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 2 cut(s) 153, 186
Sau96I GGNCC 2 cut(s) 4, 129
ScrFI CCNGG 3 cut(s) 79, 132, 385
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 55, 63, 183, 198, 249, 381
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SsiI CCGC 6 cut(s) 21, 75, 190, 272, 287, 290
StyD4I CCNGG 3 cut(s) 77, 130, 383
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 122, 139
TaiI ACGT 1 cut(s) 55
TauI GCSGC 3 cut(s) 77, 275, 290
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 58, 261
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.