Rh5CG505300

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000501
Physical Location & Seq
Forward (+)
70204020 .. 70204430
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG505300.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACCAAGCAGACTGCCCGGAAGTCCACCGGAGGAAAGGCCCCACGCAAGCAGCTGGCCACCAAGGCGGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCCCACCGCTTCAGGCCGGGAACCGTGGCGCTGAGGGAGATCAGAAAGTACCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCCTTCCAGAGGCTGGTGAGGGAGATTGCTCAGGATTTCAAGACTGATCTTCGGTTCCAGAGCAGCGCTGTGGCCGCGCTTCAGGAGGCGGCGGAGGCTTACTTGGTGGGTTTGTTTGAGGATACTAATCTGTGTGCGATTCATGCCAAGAGGGTTACCATTATGCCCAAGGATATTCAGCTTGCGAGGAGGATTAGGGGTGAGAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 1 cut(s) 275
AciI CCGC 6 cut(s) 74, 121, 190, 273, 287, 290
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 2 cut(s) 63, 270
AcuI CTGAAG 2 cut(s) 109, 263
AfaI GTAC 2 cut(s) 10, 164
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 5 cut(s) 61, 181, 196, 379, 407
AluI AGCT 5 cut(s) 61, 181, 196, 379, 407
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 211
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 6 cut(s) 3, 45, 63, 75, 128, 270
ApeKI GCWGC 2 cut(s) 58, 261
AspLEI GCGC 3 cut(s) 145, 266, 277
AspS9I GGNCC 3 cut(s) 4, 46, 76
AsuC2I CCSGG 3 cut(s) 25, 79, 132
AsuHPI GGTGA 2 cut(s) 226, 410
BalI TGGCCA 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 70, 273
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 3 cut(s) 25, 79, 132
BfoI RGCGCY 2 cut(s) 146, 267
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 3 cut(s) 25, 79, 132
BmgT120I GGNCC 3 cut(s) 4, 46, 76
BmiI GGNNCC 4 cut(s) 48, 90, 136, 254
BmrFI CCNGG 3 cut(s) 25, 79, 132
Bpu10I CCTNAGC 2 cut(s) 146, 228
BpuMI CCSGG 3 cut(s) 25, 79, 132
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 69, 138, 366
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 69, 138, 366
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 2 cut(s) 117, 400
BseXI GCAGC 2 cut(s) 70, 273
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 6 cut(s) 5, 47, 65, 77, 130, 272
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
BslI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
BsnI GGCC 6 cut(s) 5, 47, 65, 77, 130, 272
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 6 cut(s) 74, 121, 190, 273, 287, 290
BspANI GGCC 6 cut(s) 5, 47, 65, 77, 130, 272
BspCNI CTCAG 2 cut(s) 138, 241
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 4 cut(s) 48, 90, 136, 254
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 69, 138, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssT1I CCWWGG 2 cut(s) 69, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 56, 63, 194, 381
BstDEI CTNAG 3 cut(s) 146, 228, 408
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 2 cut(s) 146, 267
BstHHI GCGC 3 cut(s) 145, 266, 277
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 23, 77, 130
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 70, 273
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 6 cut(s) 5, 47, 65, 77, 130, 272
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 56, 63, 194, 381
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 3 cut(s) 145, 266, 277
Cfr13I GGNCC 3 cut(s) 4, 46, 76
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 3 cut(s) 146, 228, 408
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
EaeI YGGCCR 2 cut(s) 63, 270
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 69, 366
Eco47III AGCGCT 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 109, 263
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 69, 366
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 3 cut(s) 144, 265, 276
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 2 cut(s) 146, 267
HaeIII GGCC 6 cut(s) 5, 47, 65, 77, 130, 272
HapII CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
HhaI GCGC 3 cut(s) 145, 266, 277
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 3 cut(s) 143, 264, 275
HinP1I GCGC 3 cut(s) 143, 264, 275
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 337
HpaII CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
HphI GGTGA 2 cut(s) 226, 410
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 158, 186
Hpy188III TCNNGA 5 cut(s) 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 146, 228, 408
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 3 cut(s) 143, 264, 275
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
Lsp1109I GCAGC 2 cut(s) 70, 273
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 239
MhlI GDGCHC 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
MspR9I CCNGG 3 cut(s) 25, 79, 132
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 3 cut(s) 25, 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 4 cut(s) 48, 90, 136, 254
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 48, 90, 136, 254
PspPI GGNCC 3 cut(s) 4, 46, 76
PstNI CAGNNNCTG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
Sau96I GGNCC 3 cut(s) 4, 46, 76
ScrFI CCNGG 3 cut(s) 25, 79, 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 63, 183, 198, 381, 409
SsiI CCGC 6 cut(s) 74, 121, 190, 273, 287, 290
StyD4I CCNGG 3 cut(s) 23, 77, 130
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TauI GCSGC 3 cut(s) 77, 275, 290
TfiI GAWTC 1 cut(s) 337
TseI GCWGC 2 cut(s) 58, 261
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.