Rmu_sc0002711.1_g000014

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002711.1
OG0000501
Physical Location & Seq
Forward (+)
87876 .. 88286
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002711.1_g000014.1.cds

Sequence Viewer

Length: 411 bp
atggctcgtaccaagcaaaccgctcgcaagtccaccggaggcaaggcgccacgtaagcagcttgccaccaaggccgccaggaagtccgctccggccaccggcggagtgaagaagccacacagattcaggccgggaaccgtcgcgctccgtgagatccgcaagtaccagaagagcaccgagcttctgatccgcaagctcccattccagcggttggtccgtgaaatcgctcaggatttcaagaccgatctgaggttccagagctccgccgtggctgcgctgcaggaggcggcggaggcctacctcgtcgggctctttgaggacaccaatctgtgtgccattcatgccaagagggttacgatcatgccgaaggatatccagctcgctaggcgcatcaggggtgagcgcgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 2 cut(s) 23, 89
AccII CGCG 2 cut(s) 143, 405
AclWI GGATC 2 cut(s) 148, 181
AcoI YGGCCR 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 3 cut(s) 98, 211, 249
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 5 cut(s) 61, 181, 196, 261, 379
AluI AGCT 5 cut(s) 61, 181, 196, 261, 379
Alw21I GWGCWC 2 cut(s) 176, 263
AlwI GGATC 2 cut(s) 148, 181
AoxI GGCC 4 cut(s) 72, 93, 128, 294
ApeKI GCWGC 3 cut(s) 58, 272, 277
AspLEI GCGC 6 cut(s) 49, 145, 277, 390, 405, 407
AspS9I GGNCC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 263, 312
Bbv12I GWGCWC 2 cut(s) 176, 263
BbvI GCAGC 3 cut(s) 70, 259, 264
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 79
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 50
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 5 cut(s) 59, 75, 273, 278, 288
BlsI GCNGC 5 cut(s) 60, 76, 274, 279, 289
Bme1390I CCNGG 2 cut(s) 79, 132
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 48, 136, 254
BmrFI CCNGG 2 cut(s) 79, 132
BmsI GCATC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 69, 267
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 211, 249
Bse118I RCCGGY 1 cut(s) 98
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 69, 267
BseLI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BseMII CTCAG 2 cut(s) 239, 242
BsePI GCGCGC 1 cut(s) 403
BseXI GCAGC 3 cut(s) 70, 259, 264
Bsh1236I CGCG 2 cut(s) 143, 405
BshFI GGCC 4 cut(s) 74, 95, 130, 296
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 176, 263
BsiSI CCGG 4 cut(s) 36, 92, 99, 131
BslI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BsnI GGCC 4 cut(s) 74, 95, 130, 296
Bsp1286I GDGCHC 3 cut(s) 176, 263, 312
Bsp143I GATC 4 cut(s) 153, 186, 244, 357
BspANI GGCC 4 cut(s) 74, 95, 130, 296
BspCNI CTCAG 2 cut(s) 240, 241
BspFNI CGCG 2 cut(s) 143, 405
BspLI GGNNCC 3 cut(s) 48, 136, 254
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 2 cut(s) 148, 181
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 2 cut(s) 23, 89
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 69, 267
BssHII GCGCGC 1 cut(s) 403
BssMI GATC 4 cut(s) 153, 186, 244, 357
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 5 cut(s) 25, 63, 194, 381, 405
BstDEI CTNAG 2 cut(s) 228, 248
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 143, 405
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 6 cut(s) 49, 145, 277, 390, 405, 407
BstKTI GATC 4 cut(s) 156, 189, 247, 360
BstMBI GATC 4 cut(s) 153, 186, 244, 357
BstMWI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 77, 130
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 2 cut(s) 143, 405
BstV1I GCAGC 3 cut(s) 70, 259, 264
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 4 cut(s) 74, 95, 130, 296
BtgI CCRYGG 1 cut(s) 267
Cac8I GCNNGC 5 cut(s) 25, 63, 194, 381, 405
CfoI GCGC 6 cut(s) 49, 145, 277, 390, 405, 407
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 2 cut(s) 341, 361
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 2 cut(s) 228, 248
DinI GGCGCC 1 cut(s) 48
DpnI GATC 4 cut(s) 155, 188, 246, 359
DpnII GATC 4 cut(s) 153, 186, 244, 357
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 3 cut(s) 117, 253, 305
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 263, 312
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 263, 312
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 344, 364
FaiI YATR 2 cut(s) 342, 362
FatI CATG 2 cut(s) 340, 360
Fnu4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FriOI GRGCYC 2 cut(s) 263, 312
Fsp4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 6 cut(s) 48, 144, 276, 389, 404, 406
GluI GCNGC 5 cut(s) 59, 75, 273, 278, 288
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 4 cut(s) 74, 95, 130, 296
HapII CCGG 4 cut(s) 36, 92, 99, 131
HhaI GCGC 6 cut(s) 49, 145, 277, 390, 405, 407
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 344, 364
Hin6I GCGC 6 cut(s) 47, 143, 275, 388, 403, 405
HinP1I GCGC 6 cut(s) 47, 143, 275, 388, 403, 405
HinfI GANTC 1 cut(s) 123
HpaII CCGG 4 cut(s) 36, 92, 99, 131
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 186, 249
Hpy188III TCNNGA 3 cut(s) 230, 238, 256
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 143, 308
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
HpyF3I CTNAG 2 cut(s) 228, 248
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 344, 364
HspAI GCGC 6 cut(s) 47, 143, 275, 388, 403, 405
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 153, 186, 244, 357
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 4 cut(s) 94, 150, 201, 266
Lsp1109I GCAGC 3 cut(s) 70, 259, 264
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 155, 188, 246, 359
MbiI CCGCTC 2 cut(s) 23, 89
MboI GATC 4 cut(s) 153, 186, 244, 357
MboII GAAGA 2 cut(s) 121, 181
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 176, 263, 312
Mly113I GGCGCC 1 cut(s) 47
MnlI CCTC 7 cut(s) 32, 243, 277, 286, 310, 311, 342
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 4 cut(s) 36, 92, 99, 131
MspR9I CCNGG 2 cut(s) 79, 132
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 143, 405
MwoI GCNNNNNNNGC 6 cut(s) 55, 71, 272, 293, 341, 385
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 1 cut(s) 132
NdeII GATC 4 cut(s) 153, 186, 244, 357
NlaIII CATG 2 cut(s) 344, 364
NlaIV GGNNCC 3 cut(s) 48, 136, 254
PauI GCGCGC 1 cut(s) 403
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 60, 76, 274, 279, 289
PluTI GGCGCC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 53
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 48, 136, 254
PspPI GGNCC 1 cut(s) 214
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 1 cut(s) 153
PteI GCGCGC 1 cut(s) 403
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 273, 278, 288
Sau3AI GATC 4 cut(s) 153, 186, 244, 357
Sau96I GGNCC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 79, 132
SduI GDGCHC 3 cut(s) 176, 263, 312
SetI ASST 8 cut(s) 55, 63, 183, 198, 254, 263, 303, 381
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 278
SfoI GGCGCC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 296
SspDI GGCGCC 1 cut(s) 46
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 263
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 77, 130
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 55
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 2 cut(s) 77, 290
TfiI GAWTC 1 cut(s) 123
TseI GCWGC 3 cut(s) 58, 272, 277
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 137, 206
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.