AT5G10390

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000501
Physical Location & Seq
Reverse (-)
3268847 .. 3269594
748 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10390.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCAAGAAAGCAACTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCATAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTATCAGAAGAGCACTGAGCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATAGCTCAGGATTTCAAGACGGATCTGAGGTTTCAGAGCAGTGCTGTTGCTGCTTTACAAGAGGCTGCTGAGGCTTACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAGAGGGTCACCATCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 2 cut(s) 23, 383
AciI CCGC 3 cut(s) 21, 74, 116
AclWI GGATC 2 cut(s) 181, 252
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 98, 211
AgsI TTSAA 2 cut(s) 238, 317
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 5 cut(s) 181, 196, 227, 379, 407
AluI AGCT 5 cut(s) 181, 196, 227, 379, 407
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 2 cut(s) 181, 252
AlwNI CAGNNNCTG 2 cut(s) 137, 211
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 272, 287
AspLEI GCGC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 259, 274
BccI CCATC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 132
BisI GCNGC 4 cut(s) 75, 116, 273, 288
BlsI GCNGC 4 cut(s) 76, 117, 274, 289
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 2 cut(s) 228, 291
BpuEI CTTGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 211
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 98, 211
BseMII CTCAG 4 cut(s) 168, 239, 242, 282
BseRI GAGGAG 3 cut(s) 117, 400, 411
BseXI GCAGC 2 cut(s) 259, 274
Bsh1236I CGCG 2 cut(s) 23, 383
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 2 cut(s) 92, 99
BslI CCNNNNNNNGG 2 cut(s) 98, 211
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
Bsp68I TCGCGA 1 cut(s) 383
BspACI CCGC 3 cut(s) 21, 74, 116
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 4 cut(s) 169, 240, 241, 283
BspFNI CGCG 2 cut(s) 23, 383
BspPI GGATC 2 cut(s) 181, 252
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 153, 186, 244
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 7 cut(s) 12, 177, 228, 248, 291, 345, 366
BstEII GGTNACC 1 cut(s) 352
BstFNI CGCG 2 cut(s) 23, 383
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 2 cut(s) 23, 383
BstV1I GCAGC 2 cut(s) 259, 274
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 174, 268
BtuMI TCGCGA 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 381
CaiI CAGNNNCTG 2 cut(s) 137, 211
CfoI GCGC 1 cut(s) 335
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 361
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 7 cut(s) 12, 177, 228, 248, 291, 345, 366
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 69
Eco32I GATATC 1 cut(s) 373
Eco81I CCTNAGG 1 cut(s) 366
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 364
FaiI YATR 2 cut(s) 120, 362
FatI CATG 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 75, 116, 273, 288
Fsp4HI GCNGC 4 cut(s) 75, 116, 273, 288
GlaI GCGC 1 cut(s) 334
GluI GCNGC 4 cut(s) 75, 116, 273, 288
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 92, 99
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 335
Hin1II CATG 1 cut(s) 364
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 123, 390
HpaII CCGG 2 cut(s) 92, 99
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 5 cut(s) 168, 186, 249, 258, 395
Hpy188III TCNNGA 5 cut(s) 157, 218, 230, 238, 382
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 7 cut(s) 12, 177, 228, 248, 291, 345, 366
Hsp92II CATG 1 cut(s) 364
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 259, 274
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 329
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 176
MnlI CCTC 9 cut(s) 18, 32, 95, 243, 277, 286, 342, 378, 389
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 2 cut(s) 92, 99
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 23, 383
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 123, 390
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 4 cut(s) 76, 117, 274, 289
Psp6I CCWGG 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 130
PstNI CAGNNNCTG 2 cut(s) 137, 211
PsuI RGATCY 1 cut(s) 244
RruI TCGCGA 1 cut(s) 383
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 4 cut(s) 75, 116, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 7 cut(s) 183, 198, 229, 254, 303, 381, 409
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SsiI CCGC 3 cut(s) 21, 74, 116
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 139
TauI GCSGC 2 cut(s) 77, 118
TfiI GAWTC 2 cut(s) 123, 390
TscAI CASTG 2 cut(s) 181, 268
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 272, 287
Tsp45I GTSAC 1 cut(s) 352
TspGWI ACGGA 3 cut(s) 116, 179, 257
TspRI CASTG 2 cut(s) 181, 268
Van91I CCANNNNNTGG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.