Histone H3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 377 |
| AccBSI | CCGCTC | 1 cut(s) | 375 |
| AciI | CCGC | 2 cut(s) | 11, 375 |
| AcoI | YGGCCR | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 84, 453 |
| AflIII | ACRYGT | 1 cut(s) | 485 |
| AgsI | TTSAA | 1 cut(s) | 347 |
| AleI | CACNNNNGTG | 1 cut(s) | 484 |
| AluBI | AGCT | 1 cut(s) | 473 |
| AluI | AGCT | 1 cut(s) | 473 |
| AoxI | GGCC | 2 cut(s) | 52, 86 |
| ApeKI | GCWGC | 1 cut(s) | 473 |
| BalI | TGGCCA | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 377 |
| BbvI | GCAGC | 1 cut(s) | 460 |
| BccI | CCATC | 2 cut(s) | 264, 450 |
| BfaI | CTAG | 2 cut(s) | 123, 425 |
| BisI | GCNGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 1 cut(s) | 475 |
| BmiI | GGNNCC | 1 cut(s) | 379 |
| BmrI | ACTGGG | 1 cut(s) | 469 |
| BmuI | ACTGGG | 1 cut(s) | 469 |
| BsaAI | YACGTR | 2 cut(s) | 482, 486 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 366, 381 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 84, 453 |
| Bse1I | ACTGG | 2 cut(s) | 314, 464 |
| Bse3DI | GCAATG | 1 cut(s) | 212 |
| BseDI | CCNNGG | 3 cut(s) | 55, 366, 381 |
| BseGI | GGATG | 4 cut(s) | 10, 391, 420, 442 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 84, 453 |
| BseMI | GCAATG | 1 cut(s) | 212 |
| BseMII | CTCAG | 1 cut(s) | 301 |
| BseNI | ACTGG | 2 cut(s) | 314, 464 |
| BseRI | GAGGAG | 2 cut(s) | 146, 383 |
| BseXI | GCAGC | 1 cut(s) | 460 |
| BshFI | GGCC | 2 cut(s) | 54, 88 |
| BshNI | GGYRCC | 1 cut(s) | 377 |
| BsiWI | CGTACG | 1 cut(s) | 482 |
| BslFI | GGGAC | 2 cut(s) | 303, 476 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 84, 453 |
| BsmFI | GGGAC | 2 cut(s) | 303, 476 |
| BsnI | GGCC | 2 cut(s) | 54, 88 |
| Bsp19I | CCATGG | 1 cut(s) | 55 |
| BspACI | CCGC | 2 cut(s) | 11, 375 |
| BspANI | GGCC | 2 cut(s) | 54, 88 |
| BspCNI | CTCAG | 1 cut(s) | 300 |
| BspLI | GGNNCC | 1 cut(s) | 379 |
| BspT107I | GGYRCC | 1 cut(s) | 377 |
| BsrBI | CCGCTC | 1 cut(s) | 375 |
| BsrDI | GCAATG | 1 cut(s) | 212 |
| BsrI | ACTGG | 2 cut(s) | 314, 464 |
| BssECI | CCNNGG | 3 cut(s) | 55, 366, 381 |
| BssT1I | CCWWGG | 2 cut(s) | 55, 381 |
| Bst4CI | ACNGT | 1 cut(s) | 22 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 199 |
| BstBAI | YACGTR | 2 cut(s) | 482, 486 |
| BstDEI | CTNAG | 1 cut(s) | 287 |
| BstDSI | CCRYGG | 1 cut(s) | 55 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 82 |
| BstF5I | GGATG | 4 cut(s) | 10, 391, 420, 442 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 199, 214 |
| BstV1I | GCAGC | 1 cut(s) | 460 |
| BsuRI | GGCC | 2 cut(s) | 54, 88 |
| BtgI | CCRYGG | 1 cut(s) | 55 |
| BtsCI | GGATG | 4 cut(s) | 10, 391, 420, 442 |
| BtsIMutI | CAGTG | 3 cut(s) | 295, 307, 457 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 296, 331 |
| CviAII | CATG | 3 cut(s) | 50, 56, 160 |
| CviJI | RGCY | 4 cut(s) | 54, 88, 294, 473 |
| CviKI_1 | RGCY | 4 cut(s) | 54, 88, 294, 473 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DdeI | CTNAG | 1 cut(s) | 287 |
| EaeI | YGGCCR | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 2 cut(s) | 55, 381 |
| Eco147I | AGGCCT | 1 cut(s) | 88 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 2 cut(s) | 55, 381 |
| ErhI | CCWWGG | 2 cut(s) | 55, 381 |
| FaeI | CATG | 3 cut(s) | 53, 59, 163 |
| FaqI | GGGAC | 2 cut(s) | 303, 476 |
| FatI | CATG | 3 cut(s) | 49, 55, 159 |
| FauNDI | CATATG | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 1 cut(s) | 474 |
| FokI | GGATG | 4 cut(s) | 17, 398, 407, 429 |
| Fsp4HI | GCNGC | 1 cut(s) | 474 |
| FspBI | CTAG | 2 cut(s) | 123, 425 |
| GluI | GCNGC | 1 cut(s) | 474 |
| HaeIII | GGCC | 2 cut(s) | 54, 88 |
| Hin1II | CATG | 3 cut(s) | 53, 59, 163 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HinfI | GANTC | 4 cut(s) | 33, 176, 300, 428 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 3 cut(s) | 260, 297, 396 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 2 cut(s) | 225, 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 22 |
| HpyCH4IV | ACGT | 2 cut(s) | 481, 485 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 193 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 199, 214 |
| HpyF3I | CTNAG | 1 cut(s) | 287 |
| HpySE526I | ACGT | 2 cut(s) | 481, 485 |
| Hsp92II | CATG | 3 cut(s) | 53, 59, 163 |
| Lsp1109I | GCAGC | 1 cut(s) | 460 |
| MaeI | CTAG | 2 cut(s) | 123, 425 |
| MaeII | ACGT | 2 cut(s) | 481, 485 |
| MaeIII | GTNAC | 2 cut(s) | 80, 162 |
| MbiI | CCGCTC | 1 cut(s) | 375 |
| MboII | GAAGA | 1 cut(s) | 64 |
| MlsI | TGGCCA | 1 cut(s) | 54 |
| MluCI | AATT | 1 cut(s) | 313 |
| MluNI | TGGCCA | 1 cut(s) | 54 |
| MmeI | TCCRAC | 1 cut(s) | 224 |
| MnlI | CCTC | 5 cut(s) | 104, 167, 207, 361, 487 |
| Mox20I | TGGCCA | 1 cut(s) | 54 |
| MscI | TGGCCA | 1 cut(s) | 54 |
| MslI | CAYNNNNRTG | 3 cut(s) | 54, 169, 484 |
| Msp20I | TGGCCA | 1 cut(s) | 54 |
| MspA1I | CMGCKG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 199, 214 |
| NcoI | CCATGG | 1 cut(s) | 55 |
| NdeI | CATATG | 1 cut(s) | 189 |
| NlaIII | CATG | 3 cut(s) | 53, 59, 163 |
| NlaIV | GGNNCC | 1 cut(s) | 379 |
| NmuCI | GTSAC | 1 cut(s) | 162 |
| OliI | CACNNNNGTG | 1 cut(s) | 484 |
| PceI | AGGCCT | 1 cut(s) | 88 |
| PfeI | GAWTC | 4 cut(s) | 33, 176, 300, 428 |
| Pfl23II | CGTACG | 1 cut(s) | 482 |
| PkrI | GCNGC | 1 cut(s) | 475 |
| Ppu21I | YACGTR | 2 cut(s) | 482, 486 |
| PspLI | CGTACG | 1 cut(s) | 482 |
| PspN4I | GGNNCC | 1 cut(s) | 379 |
| PvuII | CAGCTG | 1 cut(s) | 473 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| RseI | CAYNNNNRTG | 3 cut(s) | 54, 169, 484 |
| SatI | GCNGC | 1 cut(s) | 474 |
| SetI | ASST | 6 cut(s) | 135, 199, 268, 475, 484, 488 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 54, 169, 484 |
| Sse9I | AATT | 1 cut(s) | 313 |
| SseBI | AGGCCT | 1 cut(s) | 88 |
| SsiI | CCGC | 2 cut(s) | 11, 375 |
| SspI | AATATT | 1 cut(s) | 357 |
| SspMI | CTAG | 2 cut(s) | 123, 425 |
| StuI | AGGCCT | 1 cut(s) | 88 |
| StyI | CCWWGG | 2 cut(s) | 55, 381 |
| TaaI | ACNGT | 1 cut(s) | 22 |
| TaiI | ACGT | 2 cut(s) | 484, 488 |
| TaqI | TCGA | 3 cut(s) | 259, 276, 303 |
| TasI | AATT | 1 cut(s) | 313 |
| TfiI | GAWTC | 4 cut(s) | 33, 176, 300, 428 |
| TscAI | CASTG | 3 cut(s) | 295, 314, 464 |
| TseFI | GTSAC | 1 cut(s) | 162 |
| TseI | GCWGC | 1 cut(s) | 473 |
| Tsp45I | GTSAC | 1 cut(s) | 162 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 3 cut(s) | 295, 314, 464 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 82 |
| XspI | CTAG | 2 cut(s) | 123, 425 |