FvH4_3g08401

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000501
Physical Location & Seq
Forward (+)
4913944 .. 4914967
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08401.t1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAAACCGCCCGCAAGTCCACCGGAGGCAAGGCCCCACGCAAGCAGCTCGCCACCAAGGCCGCCCGGAAGTCTGCTCCGGCCACCGGCGGAGTGAAGAAGCCTCACAGGTTCAGGCCAGGAACCGTCGCGCTCCGCGAGATCCGCAAGTACCAGAAGAGCACTGAGCTTCTCATCCGCAAGCTCCCGTTCCAGCGCCTGGTCCGTGAAATCGCTCAGGATTTCAAGACCGATCTGAGGTTCCAGAGCTCCGCCGTGGCTGCGCTGCAGGAGGCGGCGGAGGCGTACCTTGTCGGGCTCTTTGAGGATACCAATCTGTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCGAAGGATATCCAGCTGGCTAGGCGCATTAGGGGTGAACGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 2 cut(s) 143, 150
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 3 cut(s) 10, 164, 299
AfiI CCNNNNNNNGG 3 cut(s) 98, 211, 249
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 2 cut(s) 130, 210
AluBI AGCT 5 cut(s) 61, 181, 196, 261, 379
AluI AGCT 5 cut(s) 61, 181, 196, 261, 379
Alw21I GWGCWC 2 cut(s) 176, 263
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 4 cut(s) 45, 72, 93, 128
ApeKI GCWGC 3 cut(s) 58, 272, 277
AspLEI GCGC 4 cut(s) 145, 210, 277, 390
AspS9I GGNCC 2 cut(s) 46, 214
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 263, 312
Bbv12I GWGCWC 2 cut(s) 176, 263
BbvI GCAGC 3 cut(s) 70, 259, 264
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 2 cut(s) 132, 212
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 211
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 5 cut(s) 59, 75, 273, 278, 288
BlsI GCNGC 5 cut(s) 60, 76, 274, 279, 289
Bme1390I CCNGG 3 cut(s) 79, 132, 212
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 46, 214
BmiI GGNNCC 3 cut(s) 48, 136, 254
BmrFI CCNGG 3 cut(s) 79, 132, 212
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 69, 267
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 211, 249
Bse118I RCCGGY 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 2 cut(s) 132, 212
BseDI CCNNGG 2 cut(s) 69, 267
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BseMII CTCAG 3 cut(s) 168, 239, 242
BseXI GCAGC 3 cut(s) 70, 259, 264
Bsh1236I CGCG 2 cut(s) 143, 150
BshFI GGCC 4 cut(s) 47, 74, 95, 130
BsiHKAI GWGCWC 2 cut(s) 176, 263
BsiSI CCGG 4 cut(s) 36, 79, 92, 99
BslI CCNNNNNNNGG 3 cut(s) 98, 211, 249
BsnI GGCC 4 cut(s) 47, 74, 95, 130
Bsp1286I GDGCHC 3 cut(s) 176, 263, 312
Bsp143I GATC 2 cut(s) 153, 244
BspANI GGCC 4 cut(s) 47, 74, 95, 130
BspCNI CTCAG 3 cut(s) 169, 240, 241
BspFNI CGCG 2 cut(s) 143, 150
BspLI GGNNCC 3 cut(s) 48, 136, 254
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 69, 267
BssMI GATC 2 cut(s) 153, 244
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 132, 212
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 5 cut(s) 25, 56, 63, 194, 381
BstDEI CTNAG 4 cut(s) 177, 228, 248, 345
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 2 cut(s) 143, 150
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 4 cut(s) 145, 210, 277, 390
BstKTI GATC 2 cut(s) 156, 247
BstMBI GATC 2 cut(s) 153, 244
BstMWI GCNNNNNNNGC 6 cut(s) 71, 156, 272, 293, 341, 385
BstNI CCWGG 2 cut(s) 132, 212
BstSCI CCNGG 3 cut(s) 77, 130, 210
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 2 cut(s) 143, 150
BstV1I GCAGC 3 cut(s) 70, 259, 264
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 4 cut(s) 47, 74, 95, 130
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 5 cut(s) 25, 56, 63, 194, 381
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 4 cut(s) 145, 210, 277, 390
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 46, 214
Csp6I GTAC 3 cut(s) 9, 163, 298
CviAII CATG 1 cut(s) 341
CviQI GTAC 3 cut(s) 9, 163, 298
DdeI CTNAG 4 cut(s) 177, 228, 248, 345
DpnI GATC 2 cut(s) 155, 246
DpnII GATC 2 cut(s) 153, 244
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 3 cut(s) 117, 253, 305
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 263, 312
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 130, 210
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 263, 312
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 263, 312
Fsp4HI GCNGC 5 cut(s) 59, 75, 273, 278, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 4 cut(s) 144, 209, 276, 389
GluI GCNGC 5 cut(s) 59, 75, 273, 278, 288
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 47, 74, 95, 130
HapII CCGG 4 cut(s) 36, 79, 92, 99
HhaI GCGC 4 cut(s) 145, 210, 277, 390
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 143, 208, 275, 388
HinP1I GCGC 4 cut(s) 143, 208, 275, 388
HpaII CCGG 4 cut(s) 36, 79, 92, 99
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 33, 401
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 230, 238, 256
Hpy8I GTNNAC 2 cut(s) 33, 401
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 156, 272, 293, 341, 385
HpyF3I CTNAG 4 cut(s) 177, 228, 248, 345
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 143, 208, 275, 388
Kzo9I GATC 2 cut(s) 153, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 4 cut(s) 94, 150, 201, 266
Lsp1109I GCAGC 3 cut(s) 70, 259, 264
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 155, 246
MboI GATC 2 cut(s) 153, 244
MboII GAAGA 2 cut(s) 121, 181
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 176, 263, 312
MnlI CCTC 7 cut(s) 32, 126, 243, 277, 286, 310, 342
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 4 cut(s) 36, 79, 92, 99
MspR9I CCNGG 3 cut(s) 79, 132, 212
MvaI CCWGG 2 cut(s) 132, 212
MvnI CGCG 2 cut(s) 143, 150
MwoI GCNNNNNNNGC 6 cut(s) 71, 156, 272, 293, 341, 385
NciI CCSGG 1 cut(s) 79
NdeII GATC 2 cut(s) 153, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 48, 136, 254
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 362
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 60, 76, 274, 279, 289
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 130, 210
PspGI CCWGG 2 cut(s) 130, 210
PspN4I GGNNCC 3 cut(s) 48, 136, 254
PspPI GGNCC 2 cut(s) 46, 214
PstI CTGCAG 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 3 cut(s) 10, 164, 299
RsaNI GTAC 3 cut(s) 9, 163, 298
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 273, 278, 288
Sau3AI GATC 2 cut(s) 153, 244
Sau96I GGNCC 2 cut(s) 46, 214
ScrFI CCNGG 3 cut(s) 79, 132, 212
SduI GDGCHC 3 cut(s) 176, 263, 312
SetI ASST 9 cut(s) 63, 125, 183, 198, 254, 263, 303, 381, 406
SfcI CTRYAG 1 cut(s) 278
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 214
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 77, 130, 210
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 406
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 2 cut(s) 77, 290
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 58, 272, 277
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.