Rorug05G0456600

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000501
Physical Location & Seq
Forward (+)
63009015 .. 63009341
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0456600.1

Sequence Viewer

Length: 327 bp
ATGGCGTCCAGGTGGCCGCTGGTTCTCTACGCGGCCACTTGGACGCTGCTCCTCACGATGGCCGTGGCCGTGGCGGCCTTCTCTCCCGAGATGGCTTTTGTCACGGCCATATCTCCGTCATCGGCATTCTCCAAGTCCTGCGCGGGGGAGGGGTTTGTTAGGATACCGTTGGAGTACCCGAGAGAGGCAATGTGTTTTCCGGCTCACATGGTCCGGCGGTCCGGCTTGGATTTCTTCGTCCCCACGGTGTTTGCCGCTCTGGTCGTGGCGGGTTCTGCGTTGGTCGTCAGATCGTTGGCCTTGGGGGTGGGTGGTGGAGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

108

Amino Acids

11.26

Weight (kDa)

8.84

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 2 cut(s) 32, 143
AciI CCGC 7 cut(s) 17, 32, 74, 143, 217, 255, 269
AcoI YGGCCR 5 cut(s) 14, 33, 60, 66, 105
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 58, 144, 184
AjnI CCWGG 1 cut(s) 8
Ama87I CYCGRG 2 cut(s) 86, 178
AoxI GGCC 7 cut(s) 14, 33, 60, 66, 75, 105, 297
ApeKI GCWGC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 211, 219
AvaI CYCGRG 2 cut(s) 86, 178
AvaII GGWCC 2 cut(s) 211, 219
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 52, 85
BceAI ACGGC 3 cut(s) 47, 53, 120
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 156
BfuI GTATCC 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 5 cut(s) 17, 33, 47, 75, 255
BlsI GCNGC 5 cut(s) 18, 34, 48, 76, 256
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 2 cut(s) 211, 219
BmeT110I CYCGRG 2 cut(s) 86, 178
BmgT120I GGNCC 2 cut(s) 211, 219
BmrFI CCNGG 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 63, 69, 243, 300
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 144, 184
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 4 cut(s) 63, 69, 243, 300
BseLI CCNNNNNNNGG 3 cut(s) 58, 144, 184
BseMI GCAATG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 2 cut(s) 32, 143
BshFI GGCC 7 cut(s) 16, 35, 62, 68, 77, 107, 299
BsiHKCI CYCGRG 2 cut(s) 86, 178
BsiSI CCGG 3 cut(s) 200, 214, 222
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 58, 144, 184
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 7 cut(s) 16, 35, 62, 68, 77, 107, 299
BsoBI CYCGRG 2 cut(s) 86, 178
Bsp143I GATC 1 cut(s) 290
BspACI CCGC 7 cut(s) 17, 32, 74, 143, 217, 255, 269
BspANI GGCC 7 cut(s) 16, 35, 62, 68, 77, 107, 299
BspFNI CGCG 2 cut(s) 32, 143
BsrBI CCGCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 4 cut(s) 63, 69, 243, 300
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 168, 247
BstACI GRCGYC 1 cut(s) 5
BstDSI CCRYGG 3 cut(s) 63, 69, 243
BstFNI CGCG 2 cut(s) 32, 143
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 74, 275
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstUI CGCG 2 cut(s) 32, 143
BstV1I GCAGC 1 cut(s) 33
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 7 cut(s) 16, 35, 62, 68, 77, 107, 299
BtgI CCRYGG 3 cut(s) 63, 69, 243
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 211, 219
CpoI CGGWCCG 1 cut(s) 219
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CspI CGGWCCG 1 cut(s) 219
CviAII CATG 1 cut(s) 208
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EaeI YGGCCR 5 cut(s) 14, 33, 60, 66, 105
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 211, 219
Eco88I CYCGRG 2 cut(s) 86, 178
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 110, 209
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 207
FauI CCCGC 2 cut(s) 136, 262
Fnu4HI GCNGC 5 cut(s) 17, 33, 47, 75, 255
Fsp4HI GCNGC 5 cut(s) 17, 33, 47, 75, 255
GlaI GCGC 1 cut(s) 142
GluI GCNGC 5 cut(s) 17, 33, 47, 75, 255
HaeIII GGCC 7 cut(s) 16, 35, 62, 68, 77, 107, 299
HapII CCGG 3 cut(s) 200, 214, 222
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 3 cut(s) 200, 214, 222
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 55, 86
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 168, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 275
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 290
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 5, 22, 151, 213, 227, 235, 245
Lsp1109I GCAGC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 292
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 290
MboII GAAGA 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 4 cut(s) 62, 142, 178, 311
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 3 cut(s) 200, 214, 222
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 2 cut(s) 32, 143
MwoI GCNNNNNNNGC 2 cut(s) 74, 275
NdeII GATC 1 cut(s) 290
NlaIII CATG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 100
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 18, 34, 48, 76, 256
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspPI GGNCC 2 cut(s) 211, 219
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
Rsr2I CGGWCCG 1 cut(s) 219
RsrII CGGWCCG 1 cut(s) 219
SatI GCNGC 5 cut(s) 17, 33, 47, 75, 255
Sau3AI GATC 1 cut(s) 290
Sau96I GGNCC 2 cut(s) 211, 219
ScrFI CCNGG 1 cut(s) 10
SetI ASST 2 cut(s) 14, 322
SfiI GGCCNNNNNGGCC 1 cut(s) 74
SinI GGWCC 2 cut(s) 211, 219
SsiI CCGC 7 cut(s) 17, 32, 74, 143, 217, 255, 269
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 168, 247
TauI GCSGC 4 cut(s) 19, 35, 77, 257
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 211, 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.