Prupe.4G054300_v2.0.a1

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000501
Physical Location & Seq
Reverse (-)
2619509 .. 2619960
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G054300.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAAACCGCCCGCAAGTCCACCGGAGGAAAAGCTCCTCGCAAGCAGCTGGCCACCAAGGCAGCTCGTAAGTCTGCTCCGGCCACCGGCGGAGTGAAGAAGCCACACAGGTTCAGGCCCGGAACCGTGGCTCTCCGTGAGATCCGAAAGTACCAGAAGAGCACTGAGCTCCTCATCCGGAAGCTCCCATTTCAGCGTTTGGTCCGTGAAATCGCTCAGGATTTCAAGACCGACTTGAGGTTCCAGAGCTCTGCTGTGGCTGCTCTTCAGGAGGCTGCTGAGGCCTACTTGGTTGGTCTCTTCGAAGACACCAACCTGTGCGCGATCCATGCCAAGAGGGTCACCATCATGCCCAAGGATATTCAGCTCGCTAGGCGCATTAGGGGAGAGAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 3 cut(s) 21, 25, 102
AclWI GGATC 2 cut(s) 148, 331
AcoI YGGCCR 2 cut(s) 63, 93
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 10, 164
AfiI CCNNNNNNNGG 2 cut(s) 98, 249
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 7 cut(s) 47, 61, 77, 181, 196, 261, 379
AluI AGCT 7 cut(s) 47, 61, 77, 181, 196, 261, 379
Alw21I GWGCWC 3 cut(s) 176, 183, 263
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 148, 331
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 4 cut(s) 63, 93, 128, 294
ApeKI GCWGC 4 cut(s) 58, 74, 272, 287
AspLEI GCGC 2 cut(s) 335, 390
AspS9I GGNCC 2 cut(s) 129, 214
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 346
AsuII TTCGAA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 2 cut(s) 183, 263
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 3 cut(s) 176, 183, 263
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 70, 86, 259, 274
BccI CCATC 1 cut(s) 365
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 59, 75, 273, 288
BlsI GCNGC 4 cut(s) 60, 76, 274, 289
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 129, 214
BmiI GGNNCC 2 cut(s) 136, 254
BmrFI CCNGG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 2 cut(s) 228, 291
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 69, 138, 366
BsaWI WCCGGW 2 cut(s) 35, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 249
Bse118I RCCGGY 1 cut(s) 98
BseAI TCCGGA 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 69, 138, 366
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 98, 249
BseMII CTCAG 3 cut(s) 168, 242, 282
BseRI GAGGAG 2 cut(s) 39, 173
BseXI GCAGC 4 cut(s) 70, 86, 259, 274
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 4 cut(s) 65, 95, 130, 296
BsiHKAI GWGCWC 3 cut(s) 176, 183, 263
BsiSI CCGG 5 cut(s) 36, 92, 99, 132, 190
BslI CCNNNNNNNGG 2 cut(s) 98, 249
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 4 cut(s) 65, 95, 130, 296
Bso31I GGTCTC 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 3 cut(s) 176, 183, 263
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 153, 336
BspACI CCGC 3 cut(s) 21, 25, 102
BspANI GGCC 4 cut(s) 65, 95, 130, 296
BspCNI CTCAG 3 cut(s) 169, 241, 283
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 136, 254
BspPI GGATC 2 cut(s) 148, 331
BspQI GCTCTTC 2 cut(s) 164, 282
BspT104I TTCGAA 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 69, 138, 366
BssMI GATC 2 cut(s) 153, 336
BssT1I CCWWGG 2 cut(s) 69, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 3 cut(s) 164, 282, 317
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 25, 56, 63, 381
BstDEI CTNAG 4 cut(s) 177, 228, 291, 408
BstDSI CCRYGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 2 cut(s) 335, 390
BstKTI GATC 2 cut(s) 156, 339
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 153, 336
BstMWI GCNNNNNNNGC 5 cut(s) 71, 272, 293, 341, 385
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 4 cut(s) 70, 86, 259, 274
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 4 cut(s) 65, 95, 130, 296
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 4 cut(s) 25, 56, 63, 381
CfoI GCGC 2 cut(s) 335, 390
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 129, 214
Csp6I GTAC 2 cut(s) 9, 163
CviAII CATG 2 cut(s) 341, 361
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 4 cut(s) 177, 228, 291, 408
DpnI GATC 2 cut(s) 155, 338
DpnII GATC 2 cut(s) 153, 336
EaeI YGGCCR 2 cut(s) 63, 93
Eam1104I CTCTTC 3 cut(s) 164, 282, 317
EarI CTCTTC 3 cut(s) 164, 282, 317
EciI GGCGGA 1 cut(s) 117
Ecl136II GAGCTC 2 cut(s) 181, 261
Eco130I CCWWGG 2 cut(s) 69, 366
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 2 cut(s) 183, 263
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 2 cut(s) 181, 261
Eco57I CTGAAG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 352
EcoICRI GAGCTC 2 cut(s) 181, 261
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 69, 366
EcoT38I GRGCYC 2 cut(s) 183, 263
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 2 cut(s) 344, 364
FaiI YATR 2 cut(s) 342, 362
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FatI CATG 2 cut(s) 340, 360
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 59, 75, 273, 288
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 183, 263
Fsp4HI GCNGC 4 cut(s) 59, 75, 273, 288
FspBI CTAG 1 cut(s) 384
GlaI GCGC 2 cut(s) 334, 389
GluI GCNGC 4 cut(s) 59, 75, 273, 288
HaeIII GGCC 4 cut(s) 65, 95, 130, 296
HapII CCGG 5 cut(s) 36, 92, 99, 132, 190
HhaI GCGC 2 cut(s) 335, 390
Hin1II CATG 2 cut(s) 344, 364
Hin6I GCGC 2 cut(s) 333, 388
HinP1I GCGC 2 cut(s) 333, 388
HpaII CCGG 5 cut(s) 36, 92, 99, 132, 190
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 5 cut(s) 190, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 272, 293, 341, 385
HpyF3I CTNAG 4 cut(s) 177, 228, 291, 408
Hsp92II CATG 2 cut(s) 344, 364
HspAI GCGC 2 cut(s) 333, 388
Kpn2I TCCGGA 1 cut(s) 189
Kzo9I GATC 2 cut(s) 153, 336
LguI GCTCTTC 2 cut(s) 164, 282
LmnI GCTCC 4 cut(s) 52, 94, 186, 201
Lsp1109I GCAGC 4 cut(s) 70, 86, 259, 274
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 352
MalI GATC 2 cut(s) 155, 338
MboI GATC 2 cut(s) 153, 336
MboII GAAGA 5 cut(s) 121, 181, 269, 304, 329
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 176, 183, 263
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 8 cut(s) 32, 60, 194, 243, 277, 286, 342, 396
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 5 cut(s) 36, 92, 99, 132, 190
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 5 cut(s) 71, 272, 293, 341, 385
NciI CCSGG 1 cut(s) 132
NdeII GATC 2 cut(s) 153, 336
NlaIII CATG 2 cut(s) 344, 364
NlaIV GGNNCC 2 cut(s) 136, 254
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 2 cut(s) 164, 282
PkrI GCNGC 4 cut(s) 60, 76, 274, 289
Psp124BI GAGCTC 2 cut(s) 183, 263
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 136, 254
PspPI GGNCC 2 cut(s) 129, 214
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 2 cut(s) 183, 263
SapI GCTCTTC 2 cut(s) 164, 282
SatI GCNGC 4 cut(s) 59, 75, 273, 288
Sau3AI GATC 2 cut(s) 153, 336
Sau96I GGNCC 2 cut(s) 129, 214
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 176, 183, 263
SfuI TTCGAA 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 3 cut(s) 21, 25, 102
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 2 cut(s) 183, 263
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TaqII GACCGA 1 cut(s) 257
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 58, 74, 272, 287
Tsp45I GTSAC 1 cut(s) 352
TspGWI ACGGA 2 cut(s) 137, 206
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 214
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.