Prupe.6G016200_v2.0.a1

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000501
Physical Location & Seq
Forward (+)
1164480 .. 1164934
455 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G016200.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACCAAACAGACTGCTCGTAAGTCCACCGGAGGCAAGGCTCCACGCAAGCAGCTGGCCACAAAGGCTGCCCGGAAGTCAGCTCCGGCTACAGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGGACTGTGGCCCTGAGGGAGATCAGAAAGTACCAGAAGAGCACTGAGCTCTTGATCCGCAAGCTTCCATTTCAGAGGCTTGTGAGGGAGATTGCTCAGGACTTCAAGACCGATCTCCGGTTCCAGAGCAGCGCTGTGGCGGCGCTGCAAGAGGCGGCGGAGGCCTACTTGGTGGGTCTGTTTGAGGACACCAATCTCTGTGCCATTCACGCTAAGAGGGTCACCATTATGCCCAAGGACATTCAGCTCGCTCGCAGGATCAGGGGCGAGAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 190, 272, 287, 290
AclWI GGATC 2 cut(s) 181, 398
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 2 cut(s) 10, 164
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 98, 249
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 5 cut(s) 61, 89, 181, 196, 379
AluI AGCT 5 cut(s) 61, 89, 181, 196, 379
Alw21I GWGCWC 2 cut(s) 176, 183
AlwI GGATC 2 cut(s) 181, 398
AlwNI CAGNNNCTG 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 5 cut(s) 3, 63, 128, 141, 294
ApeKI GCWGC 4 cut(s) 58, 74, 261, 277
AspLEI GCGC 2 cut(s) 266, 277
AspS9I GGNCC 2 cut(s) 4, 142
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 110, 346
AxyI CCTNAGG 1 cut(s) 146
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 176, 183
BbvI GCAGC 4 cut(s) 61, 70, 264, 273
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 79
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 2 cut(s) 267, 278
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
BlsI GCNGC 6 cut(s) 60, 76, 263, 274, 279, 289
Bme1390I CCNGG 2 cut(s) 79, 132
BmgT120I GGNCC 2 cut(s) 4, 142
BmiI GGNNCC 2 cut(s) 48, 254
BmrFI CCNGG 2 cut(s) 79, 132
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 131, 366
BsaWI WCCGGW 2 cut(s) 35, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 249
Bse21I CCTNAGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 131, 366
BseLI CCNNNNNNNGG 2 cut(s) 98, 249
BseMII CTCAG 3 cut(s) 137, 168, 242
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 4 cut(s) 61, 70, 264, 273
BshFI GGCC 5 cut(s) 5, 65, 130, 143, 296
BsiHKAI GWGCWC 2 cut(s) 176, 183
BsiSI CCGG 4 cut(s) 36, 79, 92, 250
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 98, 249
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 5 cut(s) 5, 65, 130, 143, 296
Bsp1286I GDGCHC 2 cut(s) 176, 183
Bsp143I GATC 4 cut(s) 153, 186, 244, 390
BspACI CCGC 4 cut(s) 190, 272, 287, 290
BspANI GGCC 5 cut(s) 5, 65, 130, 143, 296
BspCNI CTCAG 3 cut(s) 138, 169, 241
BspLI GGNNCC 2 cut(s) 48, 254
BspPI GGATC 2 cut(s) 181, 398
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 131, 366
BssMI GATC 4 cut(s) 153, 186, 244, 390
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 122, 139
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 5 cut(s) 56, 63, 194, 381, 385
BstDEI CTNAG 5 cut(s) 146, 177, 228, 345, 408
BstEII GGTNACC 1 cut(s) 352
BstH2I RGCGCY 2 cut(s) 267, 278
BstHHI GCGC 2 cut(s) 266, 277
BstKTI GATC 4 cut(s) 156, 189, 247, 393
BstMBI GATC 4 cut(s) 153, 186, 244, 390
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 77, 130
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 61, 70, 264, 273
Bsu36I CCTNAGG 1 cut(s) 146
BsuRI GGCC 5 cut(s) 5, 65, 130, 143, 296
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 5 cut(s) 56, 63, 194, 381, 385
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 2 cut(s) 266, 277
Cfr13I GGNCC 2 cut(s) 4, 142
Csp6I GTAC 2 cut(s) 9, 163
CviQI GTAC 2 cut(s) 9, 163
DdeI CTNAG 5 cut(s) 146, 177, 228, 345, 408
DpnI GATC 4 cut(s) 155, 188, 246, 392
DpnII GATC 4 cut(s) 153, 186, 244, 390
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 366
FaiI YATR 1 cut(s) 362
FaqI GGGAC 1 cut(s) 148
Fnu4HI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
GlaI GCGC 2 cut(s) 265, 276
GluI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
HaeII RGCGCY 2 cut(s) 267, 278
HaeIII GGCC 5 cut(s) 5, 65, 130, 143, 296
HapII CCGG 4 cut(s) 36, 79, 92, 250
HhaI GCGC 2 cut(s) 266, 277
Hin6I GCGC 2 cut(s) 264, 275
HinP1I GCGC 2 cut(s) 264, 275
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 4 cut(s) 36, 79, 92, 250
HphI GGTGA 2 cut(s) 110, 346
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 158, 207
Hpy188III TCNNGA 4 cut(s) 184, 230, 238, 256
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 122, 139
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 5 cut(s) 146, 177, 228, 345, 408
HspAI GCGC 2 cut(s) 264, 275
Kzo9I GATC 4 cut(s) 153, 186, 244, 390
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 52, 94
Lsp1109I GCAGC 4 cut(s) 61, 70, 264, 273
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 155, 188, 246, 392
MboI GATC 4 cut(s) 153, 186, 244, 390
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 2 cut(s) 176, 183
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 36, 79, 92, 250
MspR9I CCNGG 2 cut(s) 79, 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 1 cut(s) 79
NdeII GATC 4 cut(s) 153, 186, 244, 390
NlaIV GGNNCC 2 cut(s) 48, 254
NmuCI GTSAC 1 cut(s) 352
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 164
PkrI GCNGC 6 cut(s) 60, 76, 263, 274, 279, 289
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 48, 254
PspPI GGNCC 2 cut(s) 4, 142
PstNI CAGNNNCTG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 10, 164
RsaNI GTAC 2 cut(s) 9, 163
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 6 cut(s) 59, 75, 262, 273, 278, 288
Sau3AI GATC 4 cut(s) 153, 186, 244, 390
Sau96I GGNCC 2 cut(s) 4, 142
ScrFI CCNGG 2 cut(s) 79, 132
SduI GDGCHC 2 cut(s) 176, 183
SetI ASST 5 cut(s) 63, 91, 183, 198, 381
SfcI CTRYAG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 359
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 4 cut(s) 190, 272, 287, 290
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 77, 130
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 122, 139
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 2 cut(s) 275, 290
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 58, 74, 261, 277
Tsp45I GTSAC 1 cut(s) 352
TspRI CASTG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.