MD03G1023100.v1.1

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000501
Physical Location & Seq
Reverse (-)
1830576 .. 1830998
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1023100.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGACTCGTTTACCAAGCAGGCACTGAGCTCAGGCCACCAGTCCACCGGAGGAAAGGCACCAAGGAAGCAGCTGGCAACTAAGGCTGCTCGGAAATCTGCTCCGGCGACCGGAGGAGTGAAAAAGCCTCACCGCTTCAGGCCGGGAACCGTGGCCCTGAGGGAGATCAGGAAGTACCAGAAGAGCACTGAGCTCCTGATCCGCAAGCTGCCGTTCCAGAGGCTGGTGAGGGAGATCGCACAGGACTTCAAGACCGATTTGAGGTTCCAGAGCAGCGCCGTGTCGGCGCTCCAGGAGGCGGCGGAGGCGTACTTGGTGGGGCTGTTTGAGGACACCAATCTGTGTGCCATTCATGCCAAGAGGGTCACCATTATGCCCAAGGACATCCAGCTTGCTCGTAGGATTAGGGGTGAGAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

10.83

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 48 - 135 7.3e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 4 cut(s) 133, 202, 299, 302
AclWI GGATC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 2 cut(s) 176, 311
AfiI CCNNNNNNNGG 4 cut(s) 110, 223, 261, 298
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 5 cut(s) 30, 73, 193, 208, 391
AluI AGCT 5 cut(s) 30, 73, 193, 208, 391
Alw21I GWGCWC 3 cut(s) 32, 188, 195
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 2 cut(s) 25, 223
AoxI GGCC 3 cut(s) 34, 140, 153
ApeKI GCWGC 4 cut(s) 70, 86, 208, 273
AspLEI GCGC 2 cut(s) 278, 289
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 4 cut(s) 122, 238, 358, 422
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 2 cut(s) 32, 195
Bbv12I GWGCWC 3 cut(s) 32, 188, 195
BbvI GCAGC 4 cut(s) 73, 82, 195, 285
BceAI ACGGC 2 cut(s) 196, 263
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 144
BfoI RGCGCY 2 cut(s) 279, 290
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 5 cut(s) 71, 87, 209, 274, 300
BlsI GCNGC 5 cut(s) 72, 88, 210, 275, 301
Bme1390I CCNGG 2 cut(s) 144, 293
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 3 cut(s) 60, 148, 266
BmrFI CCNGG 2 cut(s) 144, 293
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 62, 150, 378
BsaWI WCCGGW 2 cut(s) 47, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 223, 261, 298
Bse1I ACTGG 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 62, 150, 378
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 4 cut(s) 110, 223, 261, 298
BseMII CTCAG 4 cut(s) 17, 45, 149, 180
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 4 cut(s) 73, 82, 195, 285
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 36, 142, 155
BshNI GGYRCC 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 3 cut(s) 32, 188, 195
BsiSI CCGG 4 cut(s) 48, 104, 111, 143
BslI CCNNNNNNNGG 4 cut(s) 110, 223, 261, 298
BsnI GGCC 3 cut(s) 36, 142, 155
Bsp1286I GDGCHC 3 cut(s) 32, 188, 195
Bsp143I GATC 3 cut(s) 165, 198, 234
BspACI CCGC 4 cut(s) 133, 202, 299, 302
BspANI GGCC 3 cut(s) 36, 142, 155
BspCNI CTCAG 4 cut(s) 18, 44, 150, 181
BspLI GGNNCC 3 cut(s) 60, 148, 266
BspPI GGATC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 3 cut(s) 62, 150, 378
BssMI GATC 3 cut(s) 165, 198, 234
BssT1I CCWWGG 2 cut(s) 62, 378
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 4 cut(s) 21, 75, 206, 393
BstDEI CTNAG 5 cut(s) 26, 31, 81, 158, 189
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 1 cut(s) 384
BstH2I RGCGCY 2 cut(s) 279, 290
BstHHI GCGC 2 cut(s) 278, 289
BstKTI GATC 3 cut(s) 168, 201, 237
BstMBI GATC 3 cut(s) 165, 198, 234
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 4 cut(s) 83, 284, 305, 353
BstNI CCWGG 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 142, 291
BstV1I GCAGC 4 cut(s) 73, 82, 195, 285
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 36, 142, 155
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 23, 186
Cac8I GCNNGC 4 cut(s) 21, 75, 206, 393
CaiI CAGNNNCTG 2 cut(s) 25, 223
CfoI GCGC 2 cut(s) 278, 289
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 175, 310
CviAII CATG 1 cut(s) 353
CviQI GTAC 2 cut(s) 175, 310
DdeI CTNAG 5 cut(s) 26, 31, 81, 158, 189
DpnI GATC 3 cut(s) 167, 200, 236
DpnII GATC 3 cut(s) 165, 198, 234
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 317
Ecl136II GAGCTC 2 cut(s) 30, 193
Eco130I CCWWGG 2 cut(s) 62, 378
Eco24I GRGCYC 2 cut(s) 32, 195
Eco53kI GAGCTC 2 cut(s) 30, 193
Eco57I CTGAAG 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 364
EcoICRI GAGCTC 2 cut(s) 30, 193
EcoO65I GGTNACC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 2 cut(s) 62, 378
EcoT38I GRGCYC 2 cut(s) 32, 195
ErhI CCWWGG 2 cut(s) 62, 378
FaeI CATG 1 cut(s) 356
FaiI YATR 2 cut(s) 354, 374
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 71, 87, 209, 274, 300
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 2 cut(s) 32, 195
Fsp4HI GCNGC 5 cut(s) 71, 87, 209, 274, 300
GlaI GCGC 2 cut(s) 277, 288
GluI GCNGC 5 cut(s) 71, 87, 209, 274, 300
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 2 cut(s) 279, 290
HaeIII GGCC 3 cut(s) 36, 142, 155
HapII CCGG 4 cut(s) 48, 104, 111, 143
HhaI GCGC 2 cut(s) 278, 289
Hin1II CATG 1 cut(s) 356
Hin6I GCGC 2 cut(s) 276, 287
HinP1I GCGC 2 cut(s) 276, 287
HinfI GANTC 1 cut(s) 5
HpaII CCGG 4 cut(s) 48, 104, 111, 143
HphI GGTGA 4 cut(s) 122, 238, 358, 422
Hpy166II GTNNAC 2 cut(s) 12, 45
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 5 cut(s) 169, 196, 217, 250, 268
Hpy8I GTNNAC 2 cut(s) 12, 45
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 284, 305, 353
HpyF3I CTNAG 5 cut(s) 26, 31, 81, 158, 189
Hsp92II CATG 1 cut(s) 356
HspAI GCGC 2 cut(s) 276, 287
Kzo9I GATC 3 cut(s) 165, 198, 234
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 3 cut(s) 106, 198, 294
Lsp1109I GCAGC 4 cut(s) 73, 82, 195, 285
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 167, 200, 236
MboI GATC 3 cut(s) 165, 198, 234
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 32, 188, 195
MseI TTAA 1 cut(s) 421
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 4 cut(s) 48, 104, 111, 143
MspR9I CCNGG 2 cut(s) 144, 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 83, 284, 305, 353
NciI CCSGG 1 cut(s) 144
NdeII GATC 3 cut(s) 165, 198, 234
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 3 cut(s) 60, 148, 266
NmuCI GTSAC 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 5 cut(s) 72, 88, 210, 275, 301
Psp124BI GAGCTC 2 cut(s) 32, 195
Psp6I CCWGG 1 cut(s) 291
PspEI GGTNACC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 60, 148, 266
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 25, 223
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 2 cut(s) 176, 311
RsaNI GTAC 2 cut(s) 175, 310
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 2 cut(s) 32, 195
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 5 cut(s) 71, 87, 209, 274, 300
Sau3AI GATC 3 cut(s) 165, 198, 234
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 144, 293
SduI GDGCHC 3 cut(s) 32, 188, 195
SetI ASST 6 cut(s) 32, 75, 195, 210, 266, 393
SmiMI CAYNNNNRTG 1 cut(s) 371
SsiI CCGC 4 cut(s) 133, 202, 299, 302
SstI GAGCTC 2 cut(s) 32, 195
StyD4I CCNGG 2 cut(s) 142, 291
StyI CCWWGG 2 cut(s) 62, 378
TaaI ACNGT 1 cut(s) 151
TaqII GACCGA 1 cut(s) 269
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 2 cut(s) 30, 193
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 70, 86, 208, 273
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 2 cut(s) 30, 193
Van91I CCANNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.