Rorug04G0443400

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000501
Physical Location & Seq
Forward (+)
59939726 .. 59941834
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0443400.1

Sequence Viewer

Length: 1470 bp
ATGGGATCCATTCAAGCAGAGCCAGTAGCTGTGCCTCATGTTGTGTGCATCCCATTCCCAGCACAAGGCCATGTGAACCCATTCATGAACCTGGCCAAGCTTCTCCATGCTAGAGGCTTCCACATCACCATGGTGTACACAGAGTTCAACCACGCCCGGTTACTCAAGTCCAAAGGATCCGAGGCGCTGCAGAACTCTCCCGGTTTCAGGTTTGAGACCATTCCTGACGGTGTTCCACCTTCCAACCCTGATGCCACTCAGAGTGTCACTGAGCTCTTGTACTATACCAAGAAGCACTCGGTGGTTCCGCTCCGGGACTTGATTGTGAAGCTCAGTTCCAACCCGGATTTGCCTCCGGTGAGTTGCATTATTTCCGATGGGATTATGGCCTTCGGAATCAAAGTTGCCCGAGAGCTTGGGATTCCTGTGGTTCAGTTCTGGACTGCTTCCACATGTGGTCTCGTGGCCTATATGCAGTTCGTAGAGCTTGTCAAAAGGGGCATTTTCCCATTAAAAGATGAGAAAAATGTCACCAACGGTTACCTGGAAAACACCACTCTAGAGTGGATCCCAGGAATGAAGCACATGCGGCTCAAGGACATGCCGAACTTCGTCCGGTCCACCGATCCGGAGGACATCGCCTTCAACCGCTGGCTCGAAGAGGCCCAGGACATCCTCACCGCCGATGCCATCATCTTCAACACCTTCTATGACTTCGAGGCTGAAGTCCTGGGCACGGTTGCCTCCGTGTTCCCCAAGAACAACATTTACAACTTGGGACCACTCACGACTCTCTGCAAGACCTTGCCGGCAATCGAAGACGCCTCAACTCGGCCGAGCCTGTGGAAGGAGAATACCGAGTGCCTGACCTGGCTCGACGCCCAAAAGCCCGACTCTGTCATCTACATCAACTTCGGCAGCATTGCCGTAATGACGGCTGACGATTTCGACGAGTTCGCGTGGGGTTTGGCAAATAGCGGTCACCCGTTTTTGTGGATTGTACGGCCGGATGTTGTGAAGGGAAAATACTCAGCGACTTTGTCGGATGAGTTTCTGGAAGCCACAAAAGATCGTGGCGTGATAGCCCGATGGTGCCCTCAGGAGAAGGTGCTTGCGCACCCTTCTGTCGGGACATTTTTGACCCACAGCGGGTGGAATTCCACTCTGGAGGGGATATGCGGTGGGGTCTCCATGCTTTGCTGGCCGTTTTTCGCCGAGCAGCAGGTGAACTGTAGGTACGCGTGTACAACATGGGGGATTGGGATGGAGATTAGTACTAATGTGAAGAGAGGGGAGTTGGAGAGTTTGGTTAAGGAGATGATGGAAGGGGAGAAAGGGAAGGTGATGAGGAACAAGGCGGTGGAGTGGAAGAAGAAATCGGAGATTGCTTGCAGTGTTAAGGGAGGATCGTCTTACGCGGATTTGGAGCGATTCGTTGAGTTCGTCCTCAACTTATCGGTCAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

489

Amino Acids

54.48

Weight (kDa)

5.68

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 14 - 136 1.3e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 293 - 450 1.2e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1213
Acc16I TGCGCA 1 cut(s) 1116
Acc36I ACCTGC 1 cut(s) 1213
AccB1I GGYRCC 1 cut(s) 1092
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 3 cut(s) 959, 1241, 1418
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 9 cut(s) 308, 589, 649, 681, 978, 1149, 1179, 1358, 1418
AclWI GGATC 7 cut(s) 13, 171, 184, 562, 575, 620, 1414
AcoI YGGCCR 4 cut(s) 93, 833, 1004, 1202
AcsI RAATTY 1 cut(s) 1156
AcuI CTGAAG 1 cut(s) 744
AcyI GRCGYC 2 cut(s) 822, 879
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 6 cut(s) 137, 281, 1002, 1238, 1246, 1276
AfiI CCNNNNNNNGG 7 cut(s) 65, 207, 736, 831, 847, 1127, 1149
AflIII ACRYGT 2 cut(s) 452, 1239
AgsI TTSAA 4 cut(s) 14, 148, 646, 700
AjnI CCWGG 6 cut(s) 90, 543, 571, 666, 729, 869
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 6 cut(s) 29, 100, 274, 331, 415, 487
AluI AGCT 6 cut(s) 29, 100, 274, 331, 415, 487
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 3 cut(s) 209, 464, 1192
AlwI GGATC 7 cut(s) 13, 171, 184, 562, 575, 620, 1414
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 408
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 8 cut(s) 67, 93, 387, 465, 663, 833, 1004, 1202
ApeKI GCWGC 3 cut(s) 187, 918, 1219
ApoI RAATTY 1 cut(s) 1156
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 187, 1117
AspS9I GGNCC 3 cut(s) 618, 664, 779
AsuC2I CCSGG 4 cut(s) 157, 201, 314, 344
AsuHPI GGTGA 7 cut(s) 118, 370, 523, 670, 974, 1237, 1354
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 2 cut(s) 618, 779
AxyI CCTNAGG 1 cut(s) 1098
BaeGI GKGCMC 2 cut(s) 737, 1097
BaeI ACNNNNGTAYC 2 cut(s) 1228, 1261
BalI TGGCCA 1 cut(s) 95
BamHI GGATCC 3 cut(s) 5, 176, 567
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 1 cut(s) 276
BarI GAAGNNNNNNTAC 2 cut(s) 1010, 1042
BauI CACGAG 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 174, 930, 1231
BccI CCATC 5 cut(s) 371, 698, 1083, 1258, 1315
BceAI ACGGC 4 cut(s) 911, 951, 1019, 1189
BciT130I CCWGG 6 cut(s) 92, 545, 573, 668, 731, 871
BcnI CCSGG 4 cut(s) 157, 201, 314, 344
BcoDI GTCTC 3 cut(s) 209, 464, 1192
BfaI CTAG 2 cut(s) 111, 560
BfmI CTRYAG 2 cut(s) 188, 1231
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 1213
BisI GCNGC 4 cut(s) 188, 590, 919, 1220
BlsI GCNGC 4 cut(s) 189, 591, 920, 1221
BmcAI AGTACT 1 cut(s) 1276
Bme18I GGWCC 2 cut(s) 618, 779
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 618, 664, 779
BmiI GGNNCC 6 cut(s) 7, 178, 306, 569, 780, 1094
BmsI GCATC 3 cut(s) 57, 241, 676
BpiI GAAGAC 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 1187
BpuEI CTTGAG 2 cut(s) 149, 578
BpuMI CCSGG 4 cut(s) 157, 201, 314, 344
BsaHI GRCGYC 2 cut(s) 822, 879
BsaI GGTCTC 3 cut(s) 209, 464, 1192
BsaJI CCNNGG 5 cut(s) 129, 180, 571, 666, 730
BsaWI WCCGGW 3 cut(s) 355, 615, 628
Bsc4I CCNNNNNNNGG 7 cut(s) 65, 207, 736, 831, 847, 1127, 1149
Bse118I RCCGGY 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 23
Bse21I CCTNAGG 1 cut(s) 1098
Bse3DI GCAATG 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 628
BseBI CCWGG 6 cut(s) 92, 545, 573, 668, 731, 871
BseDI CCNNGG 5 cut(s) 129, 180, 571, 666, 730
BseGI GGATG 5 cut(s) 48, 672, 1015, 1051, 1269
BseLI CCNNNNNNNGG 7 cut(s) 65, 207, 736, 831, 847, 1127, 1149
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 5 cut(s) 261, 272, 346, 1044, 1112
BseNI ACTGG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 737, 1097
BseX3I CGGCCG 2 cut(s) 833, 1004
BseXI GCAGC 3 cut(s) 174, 930, 1231
BseYI CCCAGC 1 cut(s) 58
Bsh1236I CGCG 3 cut(s) 959, 1241, 1418
Bsh1285I CGRYCG 2 cut(s) 836, 1007
BshFI GGCC 8 cut(s) 69, 95, 389, 467, 665, 835, 1006, 1204
BshNI GGYRCC 1 cut(s) 1092
BsiEI CGRYCG 2 cut(s) 836, 1007
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 408
BsiSI CCGG 9 cut(s) 157, 201, 313, 344, 356, 616, 629, 809, 1007
BslFI GGGAC 3 cut(s) 329, 792, 1144
BslI CCNNNNNNNGG 7 cut(s) 65, 207, 736, 831, 847, 1127, 1149
BsmAI GTCTC 3 cut(s) 209, 464, 1192
BsmFI GGGAC 3 cut(s) 329, 792, 1144
BsnI GGCC 8 cut(s) 69, 95, 389, 467, 665, 835, 1006, 1204
Bso31I GGTCTC 3 cut(s) 209, 464, 1192
BsoBI CYCGRG 1 cut(s) 408
Bsp1286I GDGCHC 3 cut(s) 276, 737, 1097
Bsp13I TCCGGA 1 cut(s) 628
Bsp1407I TGTACA 2 cut(s) 135, 1244
Bsp143I GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 9 cut(s) 308, 589, 649, 681, 978, 1149, 1179, 1358, 1418
BspANI GGCC 8 cut(s) 69, 95, 389, 467, 665, 835, 1006, 1204
BspCNI CTCAG 5 cut(s) 262, 271, 345, 1043, 1111
BspEI TCCGGA 1 cut(s) 628
BspFNI CGCG 3 cut(s) 959, 1241, 1418
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 6 cut(s) 7, 178, 306, 569, 780, 1094
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 7 cut(s) 13, 171, 184, 562, 575, 620, 1414
BspT107I GGYRCC 1 cut(s) 1092
BspTNI GGTCTC 3 cut(s) 209, 464, 1192
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 808
BsrGI TGTACA 2 cut(s) 135, 1244
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 808
BssECI CCNNGG 5 cut(s) 129, 180, 571, 666, 730
BssMI GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
BssNI GRCGYC 2 cut(s) 822, 879
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 6 cut(s) 92, 545, 573, 668, 731, 871
Bst4CI ACNGT 4 cut(s) 230, 539, 739, 1232
Bst6I CTCTTC 2 cut(s) 654, 1280
BstACI GRCGYC 2 cut(s) 822, 879
BstAUI TGTACA 2 cut(s) 135, 1244
BstC8I GCNNGC 5 cut(s) 653, 810, 1113, 1202, 1390
BstDEI CTNAG 5 cut(s) 258, 270, 332, 1030, 1098
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 2 cut(s) 539, 980
BstENI CCTNNNNNAGG 1 cut(s) 845
BstF5I GGATG 5 cut(s) 48, 672, 1015, 1051, 1269
BstFNI CGCG 3 cut(s) 959, 1241, 1418
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 187, 1117
BstKTI GATC 6 cut(s) 8, 179, 570, 628, 1072, 1409
BstMAI GTCTC 3 cut(s) 209, 464, 1192
BstMBI GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
BstMCI CGRYCG 2 cut(s) 836, 1007
BstMWI GCNNNNNNNGC 2 cut(s) 589, 1201
BstNI CCWGG 6 cut(s) 92, 545, 573, 668, 731, 871
BstNSI RCATGY 3 cut(s) 456, 589, 604
BstPI GGTNACC 2 cut(s) 539, 980
BstSFI CTRYAG 2 cut(s) 188, 1231
BstSLI GKGCMC 2 cut(s) 737, 1097
BstUI CGCG 3 cut(s) 959, 1241, 1418
BstV1I GCAGC 3 cut(s) 174, 930, 1231
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 3 cut(s) 5, 176, 567
BstYI RGATCY 3 cut(s) 5, 176, 567
BstZI CGGCCG 2 cut(s) 833, 1004
Bsu36I CCTNAGG 1 cut(s) 1098
BsuRI GGCC 8 cut(s) 69, 95, 389, 467, 665, 835, 1006, 1204
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 622
BtsCI GGATG 5 cut(s) 48, 672, 1015, 1051, 1269
BtsI GCAGTG 1 cut(s) 1399
BtsIMutI CAGTG 2 cut(s) 267, 1399
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 5 cut(s) 653, 810, 1113, 1202, 1390
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 84
CfoI GCGC 2 cut(s) 187, 1117
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 3 cut(s) 618, 664, 779
CseI GACGC 2 cut(s) 830, 887
Csp6I GTAC 6 cut(s) 136, 280, 1001, 1237, 1245, 1275
CviQI GTAC 6 cut(s) 136, 280, 1001, 1237, 1245, 1275
DdeI CTNAG 5 cut(s) 258, 270, 332, 1030, 1098
DpnI GATC 6 cut(s) 7, 178, 569, 627, 1071, 1408
DpnII GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
DraIII CACNNNGTG 1 cut(s) 301
EaeI YGGCCR 4 cut(s) 93, 833, 1004, 1202
EagI CGGCCG 2 cut(s) 833, 1004
Eam1104I CTCTTC 2 cut(s) 654, 1280
EarI CTCTTC 2 cut(s) 654, 1280
Ecl136II GAGCTC 1 cut(s) 274
EclXI CGGCCG 2 cut(s) 833, 1004
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 3 cut(s) 209, 464, 1192
Eco47I GGWCC 2 cut(s) 618, 779
Eco52I CGGCCG 2 cut(s) 833, 1004
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 744
Eco81I CCTNAGG 1 cut(s) 1098
Eco88I CYCGRG 1 cut(s) 408
Eco91I GGTNACC 2 cut(s) 539, 980
EcoICRI GAGCTC 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 845
EcoO65I GGTNACC 2 cut(s) 539, 980
EcoRI GAATTC 1 cut(s) 1156
EcoRII CCWGG 6 cut(s) 90, 543, 571, 666, 729, 869
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 129
FaqI GGGAC 3 cut(s) 329, 792, 1144
FauI CCCGC 1 cut(s) 1142
Fnu4HI GCNGC 4 cut(s) 188, 590, 919, 1220
FokI GGATG 5 cut(s) 35, 659, 1022, 1058, 1276
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 188, 590, 919, 1220
FspBI CTAG 2 cut(s) 111, 560
FspI TGCGCA 1 cut(s) 1116
GlaI GCGC 2 cut(s) 186, 1116
GluI GCNGC 4 cut(s) 188, 590, 919, 1220
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 1187
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 8 cut(s) 69, 95, 389, 467, 665, 835, 1006, 1204
HapII CCGG 9 cut(s) 157, 201, 313, 344, 356, 616, 629, 809, 1007
HgaI GACGC 2 cut(s) 830, 887
HhaI GCGC 2 cut(s) 187, 1117
Hin1I GRCGYC 2 cut(s) 822, 879
Hin6I GCGC 2 cut(s) 185, 1115
HinP1I GCGC 2 cut(s) 185, 1115
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 396, 421, 790, 893, 1431
HpaII CCGG 9 cut(s) 157, 201, 313, 344, 356, 616, 629, 809, 1007
HphI GGTGA 7 cut(s) 118, 370, 523, 670, 974, 1237, 1354
Hpy166II GTNNAC 6 cut(s) 76, 136, 138, 621, 1228, 1245
Hpy188I TCNGA 6 cut(s) 181, 261, 376, 395, 1045, 1381
Hpy8I GTNNAC 6 cut(s) 76, 136, 138, 621, 1228, 1245
Hpy99I CGWCG 2 cut(s) 881, 953
HpyCH4III ACNGT 4 cut(s) 230, 539, 739, 1232
HpyCH4V TGCA 6 cut(s) 48, 190, 366, 475, 798, 1392
HpyF10VI GCNNNNNNNGC 2 cut(s) 589, 1201
HpyF3I CTNAG 5 cut(s) 258, 270, 332, 1030, 1098
Hsp92I GRCGYC 2 cut(s) 822, 879
HspAI GCGC 2 cut(s) 185, 1115
Kpn2I TCCGGA 1 cut(s) 628
KroI GCCGGC 1 cut(s) 808
KroNI GCCGGC 1 cut(s) 810
Kzo9I GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
LmnI GCTCC 2 cut(s) 315, 1426
Lsp1109I GCAGC 3 cut(s) 174, 930, 1231
LweI GCATC 3 cut(s) 57, 241, 676
MaeI CTAG 2 cut(s) 111, 560
MaeIII GTNAC 5 cut(s) 159, 265, 529, 539, 980
MalI GATC 6 cut(s) 7, 178, 569, 627, 1071, 1408
MbiI CCGCTC 1 cut(s) 310
MboI GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
MboII GAAGA 6 cut(s) 671, 688, 830, 1297, 1381, 1384
MflI RGATCY 3 cut(s) 5, 176, 567
MhlI GDGCHC 3 cut(s) 276, 737, 1097
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 1 cut(s) 1156
MluI ACGCGT 1 cut(s) 1239
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 2 cut(s) 784, 887
MmeI TCCRAC 4 cut(s) 267, 363, 1023, 1278
Mox20I TGGCCA 1 cut(s) 95
MroI TCCGGA 1 cut(s) 628
MroNI GCCGGC 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 95
MseI TTAA 3 cut(s) 512, 1311, 1398
MslI CAYNNNNRTG 2 cut(s) 128, 131
Msp20I TGGCCA 1 cut(s) 95
MspA1I CMGCKG 2 cut(s) 651, 1149
MspI CCGG 9 cut(s) 157, 201, 313, 344, 356, 616, 629, 809, 1007
MvaI CCWGG 6 cut(s) 92, 545, 573, 668, 731, 871
MvnI CGCG 3 cut(s) 959, 1241, 1418
MwoI GCNNNNNNNGC 2 cut(s) 589, 1201
NaeI GCCGGC 1 cut(s) 810
NciI CCSGG 4 cut(s) 157, 201, 314, 344
NcoI CCATGG 1 cut(s) 129
NdeII GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
NgoMIV GCCGGC 1 cut(s) 808
NlaIV GGNNCC 6 cut(s) 7, 178, 306, 569, 780, 1094
NmeAIII GCCGAG 3 cut(s) 811, 861, 1240
NmuCI GTSAC 3 cut(s) 265, 529, 980
NsbI TGCGCA 1 cut(s) 1116
NspI RCATGY 3 cut(s) 456, 589, 604
OliI CACNNNNGTG 1 cut(s) 131
PagI TCATGA 1 cut(s) 84
PaqCI CACCTGC 1 cut(s) 1213
PciI ACATGT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 2 cut(s) 948, 1440
PdiI GCCGGC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 396, 421, 1431
PflFI GACNNNGTC 2 cut(s) 896, 1039
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 4 cut(s) 189, 591, 920, 1221
PleI GAGTC 2 cut(s) 784, 887
PpsI GAGTC 2 cut(s) 784, 887
PscI ACATGT 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 6 cut(s) 90, 543, 571, 666, 729, 869
PspEI GGTNACC 2 cut(s) 539, 980
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 6 cut(s) 90, 543, 571, 666, 729, 869
PspN4I GGNNCC 6 cut(s) 7, 178, 306, 569, 780, 1094
PspPI GGNCC 3 cut(s) 618, 664, 779
PsrI GAACNNNNNNTAC 6 cut(s) 128, 160, 752, 784, 1220, 1252
PstI CTGCAG 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 3 cut(s) 5, 176, 567
PsyI GACNNNGTC 2 cut(s) 896, 1039
RsaI GTAC 6 cut(s) 137, 281, 1002, 1238, 1246, 1276
RsaNI GTAC 6 cut(s) 136, 280, 1001, 1237, 1245, 1275
RseI CAYNNNNRTG 2 cut(s) 128, 131
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 512, 1311, 1398
SatI GCNGC 4 cut(s) 188, 590, 919, 1220
Sau3AI GATC 6 cut(s) 5, 176, 567, 625, 1069, 1406
Sau96I GGNCC 3 cut(s) 618, 664, 779
ScaI AGTACT 1 cut(s) 1276
SchI GAGTC 2 cut(s) 784, 887
SduI GDGCHC 3 cut(s) 276, 737, 1097
SfaNI GCATC 3 cut(s) 57, 241, 676
SfcI CTRYAG 2 cut(s) 188, 1231
SinI GGWCC 2 cut(s) 618, 779
SmiMI CAYNNNNRTG 2 cut(s) 128, 131
SmlI CTYRAG 2 cut(s) 164, 593
SmoI CTYRAG 2 cut(s) 164, 593
Sse9I AATT 1 cut(s) 1156
SsiI CCGC 9 cut(s) 308, 589, 649, 681, 978, 1149, 1179, 1358, 1418
SspMI CTAG 2 cut(s) 111, 560
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 230, 539, 739, 1232
TaqI TCGA 5 cut(s) 657, 717, 816, 876, 948
TaqII GACCGA 1 cut(s) 1447
TasI AATT 1 cut(s) 1156
TatI WGTACW 4 cut(s) 135, 279, 1244, 1274
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 3 cut(s) 396, 421, 1431
Tru1I TTAA 3 cut(s) 512, 1311, 1398
Tru9I TTAA 3 cut(s) 512, 1311, 1398
TscAI CASTG 2 cut(s) 274, 1399
TseFI GTSAC 3 cut(s) 265, 529, 980
TseI GCWGC 3 cut(s) 187, 918, 1219
Tsp45I GTSAC 3 cut(s) 265, 529, 980
TspDTI ATGAA 3 cut(s) 73, 101, 593
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 2 cut(s) 274, 1399
Tth111I GACNNNGTC 2 cut(s) 896, 1039
VpaK11BI GGWCC 2 cut(s) 618, 779
XagI CCTNNNNNAGG 1 cut(s) 845
XapI RAATTY 1 cut(s) 1156
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 3 cut(s) 456, 589, 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 111, 560
ZrmI AGTACT 1 cut(s) 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.