Histone H3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 398 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 260 |
| AccII | CGCG | 1 cut(s) | 1190 |
| AciI | CCGC | 1 cut(s) | 90 |
| AclWI | GGATC | 3 cut(s) | 648, 1274, 1287 |
| AcsI | RAATTY | 4 cut(s) | 476, 496, 574, 589 |
| AcuI | CTGAAG | 4 cut(s) | 249, 285, 651, 696 |
| AfaI | GTAC | 3 cut(s) | 422, 626, 978 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 103, 875 |
| AflIII | ACRYGT | 1 cut(s) | 255 |
| AgsI | TTSAA | 9 cut(s) | 270, 310, 383, 706, 779, 962, 1145, 1368, 1492 |
| Alw21I | GWGCWC | 1 cut(s) | 349 |
| Alw26I | GTCTC | 1 cut(s) | 1227 |
| AlwI | GGATC | 3 cut(s) | 648, 1274, 1287 |
| Ama87I | CYCGRG | 2 cut(s) | 941, 1024 |
| AoxI | GGCC | 3 cut(s) | 67, 105, 511 |
| ApeKI | GCWGC | 6 cut(s) | 233, 863, 1256, 1325, 1456, 1544 |
| ApoI | RAATTY | 4 cut(s) | 476, 496, 574, 589 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 574 |
| AspS9I | GGNCC | 1 cut(s) | 511 |
| AsuC2I | CCSGG | 1 cut(s) | 1398 |
| AsuHPI | GGTGA | 3 cut(s) | 539, 662, 706 |
| AvaI | CYCGRG | 2 cut(s) | 941, 1024 |
| BamHI | GGATCC | 1 cut(s) | 1279 |
| BanII | GRGCYC | 1 cut(s) | 349 |
| Bbv12I | GWGCWC | 1 cut(s) | 349 |
| BbvI | GCAGC | 6 cut(s) | 220, 875, 1268, 1312, 1443, 1531 |
| BceAI | ACGGC | 1 cut(s) | 81 |
| BcnI | CCSGG | 1 cut(s) | 1398 |
| BcoDI | GTCTC | 1 cut(s) | 1227 |
| BfaI | CTAG | 6 cut(s) | 5, 71, 543, 678, 870, 1332 |
| BfmI | CTRYAG | 1 cut(s) | 1102 |
| BisI | GCNGC | 7 cut(s) | 90, 234, 864, 1257, 1326, 1457, 1545 |
| BlpI | GCTNAGC | 2 cut(s) | 348, 1248 |
| BlsI | GCNGC | 7 cut(s) | 91, 235, 865, 1258, 1327, 1458, 1546 |
| Bme1390I | CCNGG | 1 cut(s) | 1398 |
| BmeT110I | CYCGRG | 2 cut(s) | 941, 1024 |
| BmgT120I | GGNCC | 1 cut(s) | 511 |
| BmiI | GGNNCC | 1 cut(s) | 1281 |
| BmrFI | CCNGG | 1 cut(s) | 1398 |
| BmsI | GCATC | 1 cut(s) | 1468 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 935, 967 |
| BpmI | CTGGAG | 1 cut(s) | 20 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 348, 1248 |
| BpuEI | CTTGAG | 2 cut(s) | 306, 937 |
| BpuMI | CCSGG | 1 cut(s) | 1398 |
| BsaJI | CCNNGG | 1 cut(s) | 430 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 103, 875 |
| Bse1I | ACTGG | 2 cut(s) | 70, 391 |
| Bse3DI | GCAATG | 2 cut(s) | 1356, 1530 |
| BseDI | CCNNGG | 1 cut(s) | 430 |
| BseGI | GGATG | 4 cut(s) | 1035, 1088, 1406, 1426 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 103, 875 |
| BseMI | GCAATG | 2 cut(s) | 1356, 1530 |
| BseMII | CTCAG | 4 cut(s) | 362, 731, 1143, 1263 |
| BseNI | ACTGG | 2 cut(s) | 70, 391 |
| BseXI | GCAGC | 6 cut(s) | 220, 875, 1268, 1312, 1443, 1531 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| Bsh1236I | CGCG | 1 cut(s) | 1190 |
| BshFI | GGCC | 3 cut(s) | 69, 107, 513 |
| BsiHKAI | GWGCWC | 1 cut(s) | 349 |
| BsiHKCI | CYCGRG | 2 cut(s) | 941, 1024 |
| BsiSI | CCGG | 2 cut(s) | 126, 1397 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 103, 875 |
| BsmAI | GTCTC | 1 cut(s) | 1227 |
| BsmI | GAATGC | 1 cut(s) | 712 |
| BsnI | GGCC | 3 cut(s) | 69, 107, 513 |
| BsoBI | CYCGRG | 2 cut(s) | 941, 1024 |
| Bsp1286I | GDGCHC | 1 cut(s) | 349 |
| Bsp1407I | TGTACA | 1 cut(s) | 624 |
| Bsp143I | GATC | 3 cut(s) | 640, 1279, 1410 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 348, 1248 |
| BspACI | CCGC | 1 cut(s) | 90 |
| BspANI | GGCC | 3 cut(s) | 69, 107, 513 |
| BspCNI | CTCAG | 4 cut(s) | 361, 730, 1144, 1264 |
| BspFNI | CGCG | 1 cut(s) | 1190 |
| BspHI | TCATGA | 2 cut(s) | 751, 1432 |
| BspLI | GGNNCC | 1 cut(s) | 1281 |
| BspPI | GGATC | 3 cut(s) | 648, 1274, 1287 |
| BsrDI | GCAATG | 2 cut(s) | 1356, 1530 |
| BsrGI | TGTACA | 1 cut(s) | 624 |
| BsrI | ACTGG | 2 cut(s) | 70, 391 |
| BssECI | CCNNGG | 1 cut(s) | 430 |
| BssMI | GATC | 3 cut(s) | 640, 1279, 1410 |
| Bst4CI | ACNGT | 3 cut(s) | 85, 431, 1292 |
| Bst6I | CTCTTC | 2 cut(s) | 185, 462 |
| BstAUI | TGTACA | 1 cut(s) | 624 |
| BstC8I | GCNNGC | 2 cut(s) | 94, 1254 |
| BstDEI | CTNAG | 5 cut(s) | 348, 717, 1152, 1248, 1272 |
| BstDSI | CCRYGG | 1 cut(s) | 430 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 873 |
| BstF5I | GGATG | 4 cut(s) | 1035, 1088, 1406, 1426 |
| BstFNI | CGCG | 1 cut(s) | 1190 |
| BstKTI | GATC | 3 cut(s) | 643, 1282, 1413 |
| BstMAI | GTCTC | 1 cut(s) | 1227 |
| BstMBI | GATC | 3 cut(s) | 640, 1279, 1410 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 122, 1253, 1360 |
| BstNSI | RCATGY | 3 cut(s) | 259, 1017, 1268 |
| BstSCI | CCNGG | 1 cut(s) | 1396 |
| BstSFI | CTRYAG | 1 cut(s) | 1102 |
| BstUI | CGCG | 1 cut(s) | 1190 |
| BstV1I | GCAGC | 6 cut(s) | 220, 875, 1268, 1312, 1443, 1531 |
| BstX2I | RGATCY | 2 cut(s) | 640, 1279 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 904 |
| BstYI | RGATCY | 2 cut(s) | 640, 1279 |
| BsuRI | GGCC | 3 cut(s) | 69, 107, 513 |
| BtgI | CCRYGG | 1 cut(s) | 430 |
| BtsCI | GGATG | 4 cut(s) | 1035, 1088, 1406, 1426 |
| BtsIMutI | CAGTG | 2 cut(s) | 541, 627 |
| Cac8I | GCNNGC | 2 cut(s) | 94, 1254 |
| CciI | TCATGA | 2 cut(s) | 751, 1432 |
| Cfr13I | GGNCC | 1 cut(s) | 511 |
| CseI | GACGC | 1 cut(s) | 1196 |
| Csp6I | GTAC | 3 cut(s) | 421, 625, 977 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 270, 305, 725, 760 |
| CviQI | GTAC | 3 cut(s) | 421, 625, 977 |
| DdeI | CTNAG | 5 cut(s) | 348, 717, 1152, 1248, 1272 |
| DpnI | GATC | 3 cut(s) | 642, 1281, 1412 |
| DpnII | GATC | 3 cut(s) | 640, 1279, 1410 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 260 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 260 |
| Eam1104I | CTCTTC | 2 cut(s) | 185, 462 |
| EarI | CTCTTC | 2 cut(s) | 185, 462 |
| Ecl136II | GAGCTC | 1 cut(s) | 347 |
| Eco24I | GRGCYC | 1 cut(s) | 349 |
| Eco53kI | GAGCTC | 1 cut(s) | 347 |
| Eco57I | CTGAAG | 4 cut(s) | 249, 285, 651, 696 |
| Eco88I | CYCGRG | 2 cut(s) | 941, 1024 |
| EcoICRI | GAGCTC | 1 cut(s) | 347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 873 |
| EcoRI | GAATTC | 3 cut(s) | 496, 574, 589 |
| EcoT38I | GRGCYC | 1 cut(s) | 349 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 277, 309, 315, 347 |
| FauNDI | CATATG | 1 cut(s) | 417 |
| Fnu4HI | GCNGC | 7 cut(s) | 90, 234, 864, 1257, 1326, 1457, 1545 |
| FokI | GGATG | 4 cut(s) | 1042, 1075, 1413, 1433 |
| FriOI | GRGCYC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 7 cut(s) | 90, 234, 864, 1257, 1326, 1457, 1545 |
| FspBI | CTAG | 6 cut(s) | 5, 71, 543, 678, 870, 1332 |
| GluI | GCNGC | 7 cut(s) | 90, 234, 864, 1257, 1326, 1457, 1545 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| GsuI | CTGGAG | 1 cut(s) | 20 |
| HaeIII | GGCC | 3 cut(s) | 69, 107, 513 |
| HapII | CCGG | 2 cut(s) | 126, 1397 |
| HgaI | GACGC | 1 cut(s) | 1196 |
| HincII | GTYRAC | 1 cut(s) | 291 |
| HindII | GTYRAC | 1 cut(s) | 291 |
| HinfI | GANTC | 4 cut(s) | 539, 697, 748, 962 |
| HpaII | CCGG | 2 cut(s) | 126, 1397 |
| HphI | GGTGA | 3 cut(s) | 539, 662, 706 |
| Hpy166II | GTNNAC | 3 cut(s) | 291, 627, 687 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 1464 |
| Hpy188III | TCNNGA | 8 cut(s) | 37, 166, 187, 380, 543, 752, 1142, 1433 |
| Hpy8I | GTNNAC | 3 cut(s) | 291, 627, 687 |
| Hpy99I | CGWCG | 1 cut(s) | 1190 |
| HpyAV | CCTTC | 5 cut(s) | 309, 540, 564, 655, 1446 |
| HpyCH4III | ACNGT | 3 cut(s) | 85, 431, 1292 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 122, 1253, 1360 |
| HpyF3I | CTNAG | 5 cut(s) | 348, 717, 1152, 1248, 1272 |
| Kzo9I | GATC | 3 cut(s) | 640, 1279, 1410 |
| LmnI | GCTCC | 3 cut(s) | 344, 725, 871 |
| Lsp1109I | GCAGC | 6 cut(s) | 220, 875, 1268, 1312, 1443, 1531 |
| LweI | GCATC | 1 cut(s) | 1468 |
| MaeI | CTAG | 6 cut(s) | 5, 71, 543, 678, 870, 1332 |
| MaeIII | GTNAC | 7 cut(s) | 262, 386, 796, 1019, 1267, 1286, 1509 |
| MalI | GATC | 3 cut(s) | 642, 1281, 1412 |
| MboI | GATC | 3 cut(s) | 640, 1279, 1410 |
| MboII | GAAGA | 8 cut(s) | 172, 479, 679, 941, 944, 957, 1157, 1393 |
| MflI | RGATCY | 2 cut(s) | 640, 1279 |
| MhlI | GDGCHC | 1 cut(s) | 349 |
| MluCI | AATT | 6 cut(s) | 476, 496, 574, 589, 729, 1337 |
| MlyI | GAGTC | 1 cut(s) | 706 |
| MmeI | TCCRAC | 4 cut(s) | 237, 453, 869, 1257 |
| MnlI | CCTC | 9 cut(s) | 44, 65, 127, 197, 576, 853, 1336, 1339, 1420 |
| MroXI | GAANNNNTTC | 1 cut(s) | 574 |
| MseI | TTAA | 4 cut(s) | 837, 1095, 1307, 1552 |
| MslI | CAYNNNNRTG | 6 cut(s) | 23, 254, 416, 812, 902, 1241 |
| MspI | CCGG | 2 cut(s) | 126, 1397 |
| MspR9I | CCNGG | 1 cut(s) | 1398 |
| Mva1269I | GAATGC | 1 cut(s) | 712 |
| MvnI | CGCG | 1 cut(s) | 1190 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 122, 1253, 1360 |
| NciI | CCSGG | 1 cut(s) | 1398 |
| NdeI | CATATG | 1 cut(s) | 417 |
| NdeII | GATC | 3 cut(s) | 640, 1279, 1410 |
| NlaIV | GGNNCC | 1 cut(s) | 1281 |
| NmuCI | GTSAC | 4 cut(s) | 262, 386, 1019, 1286 |
| NspI | RCATGY | 3 cut(s) | 259, 1017, 1268 |
| PaeR7I | CTCGAG | 1 cut(s) | 941 |
| PagI | TCATGA | 2 cut(s) | 751, 1432 |
| PciI | ACATGT | 1 cut(s) | 255 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 590 |
| PctI | GAATGC | 1 cut(s) | 712 |
| PdmI | GAANNNNTTC | 1 cut(s) | 574 |
| PfeI | GAWTC | 3 cut(s) | 539, 748, 962 |
| PkrI | GCNGC | 7 cut(s) | 91, 235, 865, 1258, 1327, 1458, 1546 |
| PleI | GAGTC | 1 cut(s) | 705 |
| PpsI | GAGTC | 1 cut(s) | 705 |
| PscI | ACATGT | 1 cut(s) | 255 |
| PsiI | TTATAA | 1 cut(s) | 398 |
| Psp124BI | GAGCTC | 1 cut(s) | 349 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 1281 |
| PspPI | GGNCC | 1 cut(s) | 511 |
| PspXI | VCTCGAGB | 1 cut(s) | 941 |
| PsuI | RGATCY | 2 cut(s) | 640, 1279 |
| RsaI | GTAC | 3 cut(s) | 422, 626, 978 |
| RsaNI | GTAC | 3 cut(s) | 421, 625, 977 |
| RseI | CAYNNNNRTG | 6 cut(s) | 23, 254, 416, 812, 902, 1241 |
| SacI | GAGCTC | 1 cut(s) | 349 |
| SaqAI | TTAA | 4 cut(s) | 837, 1095, 1307, 1552 |
| SatI | GCNGC | 7 cut(s) | 90, 234, 864, 1257, 1326, 1457, 1545 |
| Sau3AI | GATC | 3 cut(s) | 640, 1279, 1410 |
| Sau96I | GGNCC | 1 cut(s) | 511 |
| SchI | GAGTC | 1 cut(s) | 706 |
| ScrFI | CCNGG | 1 cut(s) | 1398 |
| SduI | GDGCHC | 1 cut(s) | 349 |
| SfaNI | GCATC | 1 cut(s) | 1468 |
| SfcI | CTRYAG | 1 cut(s) | 1102 |
| Sfr274I | CTCGAG | 1 cut(s) | 941 |
| SlaI | CTCGAG | 1 cut(s) | 941 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 23, 254, 416, 812, 902, 1241 |
| SmlI | CTYRAG | 3 cut(s) | 321, 941, 952 |
| SmoI | CTYRAG | 3 cut(s) | 321, 941, 952 |
| Sse9I | AATT | 6 cut(s) | 476, 496, 574, 589, 729, 1337 |
| SsiI | CCGC | 1 cut(s) | 90 |
| SspMI | CTAG | 6 cut(s) | 5, 71, 543, 678, 870, 1332 |
| SstI | GAGCTC | 1 cut(s) | 349 |
| StyD4I | CCNGG | 1 cut(s) | 1396 |
| TaaI | ACNGT | 3 cut(s) | 85, 431, 1292 |
| TaqI | TCGA | 6 cut(s) | 568, 578, 593, 942, 968, 1413 |
| TasI | AATT | 6 cut(s) | 476, 496, 574, 589, 729, 1337 |
| TatI | WGTACW | 2 cut(s) | 420, 624 |
| TauI | GCSGC | 1 cut(s) | 92 |
| TfiI | GAWTC | 3 cut(s) | 539, 748, 962 |
| Tru1I | TTAA | 4 cut(s) | 837, 1095, 1307, 1552 |
| Tru9I | TTAA | 4 cut(s) | 837, 1095, 1307, 1552 |
| TscAI | CASTG | 2 cut(s) | 541, 634 |
| TseFI | GTSAC | 4 cut(s) | 262, 386, 1019, 1286 |
| TseI | GCWGC | 6 cut(s) | 233, 863, 1256, 1325, 1456, 1544 |
| Tsp45I | GTSAC | 4 cut(s) | 262, 386, 1019, 1286 |
| TspRI | CASTG | 2 cut(s) | 541, 634 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 873 |
| XapI | RAATTY | 4 cut(s) | 476, 496, 574, 589 |
| XbaI | TCTAGA | 1 cut(s) | 542 |
| XceI | RCATGY | 3 cut(s) | 259, 1017, 1268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 100 |
| XhoI | CTCGAG | 1 cut(s) | 941 |
| XmnI | GAANNNNTTC | 1 cut(s) | 574 |
| XspI | CTAG | 6 cut(s) | 5, 71, 543, 678, 870, 1332 |