Rh5BG533400

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000501
Physical Location & Seq
Reverse (-)
83987950 .. 83988360
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG533400.1

Sequence Viewer

Length: 411 bp
ATGGCTCGTACCAAGCAGACCGCTCGCAAGTCCACCGGAGGAAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCTGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCTCACCGGTTCAGGCCGGGAACGGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCGTTCCAGAGGCTTGTGAGGGAGATTGCTCAGGATTTCAAGACGGATCTCCGATTCCAGAGCAGCGCCGTGGCGGCGCTTCAGGAGGCGGCAGAGGCGTACCTGGTGGGGCTTTTCGAGGATACGAATCTCTGCGCTATTCATGCTAAGAGGGTTACTATTATGCCCAAGGATATTCAGCTTGCGAGGAGAATCAGAGGCGAGAGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 4 cut(s) 21, 190, 272, 287
AclWI GGATC 2 cut(s) 181, 252
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 3 cut(s) 10, 164, 299
AfiI CCNNNNNNNGG 2 cut(s) 85, 98
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 61, 181, 196, 379
AluI AGCT 4 cut(s) 61, 181, 196, 379
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 2 cut(s) 181, 252
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 58, 74, 261
AsiGI ACCGGT 1 cut(s) 120
AspLEI GCGC 5 cut(s) 49, 145, 266, 277, 335
AsuC2I CCSGG 2 cut(s) 79, 132
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 61, 70, 273
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 2 cut(s) 79, 132
BfoI RGCGCY 4 cut(s) 50, 146, 267, 278
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 3 cut(s) 79, 132, 302
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 3 cut(s) 79, 132, 302
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 79, 132
BsaBI GATNNNNATC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 4 cut(s) 50, 69, 267, 366
BsaWI WCCGGW 3 cut(s) 35, 98, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 98
Bse118I RCCGGY 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 50, 69, 267, 366
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 85, 98
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 2 cut(s) 117, 400
BseXI GCAGC 3 cut(s) 61, 70, 273
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 46
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
BslI CCNNNNNNNGG 2 cut(s) 85, 98
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 4 cut(s) 21, 190, 272, 287
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 138, 241
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 2 cut(s) 181, 252
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 4 cut(s) 50, 69, 267, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 69, 366
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 25, 63, 194, 381
BstDEI CTNAG 4 cut(s) 146, 228, 345, 408
BstDSI CCRYGG 1 cut(s) 267
BstH2I RGCGCY 4 cut(s) 50, 146, 267, 278
BstHHI GCGC 5 cut(s) 49, 145, 266, 277, 335
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 77, 130, 300
BstV1I GCAGC 3 cut(s) 61, 70, 273
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 267
Cac8I GCNNGC 4 cut(s) 25, 63, 194, 381
CfoI GCGC 5 cut(s) 49, 145, 266, 277, 335
Cfr10I RCCGGY 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 9, 163, 298
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 1 cut(s) 341
CviQI GTAC 3 cut(s) 9, 163, 298
DdeI CTNAG 4 cut(s) 146, 228, 345, 408
DinI GGCGCC 1 cut(s) 48
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 69, 366
Eco57I CTGAAG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 69, 366
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 5 cut(s) 48, 144, 265, 276, 334
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 4 cut(s) 50, 146, 267, 278
HaeIII GGCC 1 cut(s) 130
HapII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HhaI GCGC 5 cut(s) 49, 145, 266, 277, 335
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 5 cut(s) 47, 143, 264, 275, 333
HinP1I GCGC 5 cut(s) 47, 143, 264, 275, 333
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 252, 325, 390
HpaII CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 186, 251, 395
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
HpyF3I CTNAG 4 cut(s) 146, 228, 345, 408
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 5 cut(s) 47, 143, 264, 275, 333
KasI GGCGCC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
Lsp1109I GCAGC 3 cut(s) 61, 70, 273
MabI ACCWGGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 2 cut(s) 121, 181
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 36, 79, 92, 99, 121, 131
MspR9I CCNGG 3 cut(s) 79, 132, 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 5 cut(s) 55, 71, 272, 293, 341
NarI GGCGCC 1 cut(s) 47
NciI CCSGG 2 cut(s) 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 90
NmeAIII GCCGAG 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 3 cut(s) 252, 325, 390
PinAI ACCGGT 1 cut(s) 120
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
PluTI GGCGCC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 48, 90
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 3 cut(s) 10, 164, 299
RsaNI GTAC 3 cut(s) 9, 163, 298
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
ScrFI CCNGG 3 cut(s) 79, 132, 302
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 63, 183, 198, 303, 381
SexAI ACCWGGT 1 cut(s) 300
SfoI GGCGCC 1 cut(s) 48
SsiI CCGC 4 cut(s) 21, 190, 272, 287
SspDI GGCGCC 1 cut(s) 46
StyD4I CCNGG 3 cut(s) 77, 130, 300
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 315
TauI GCSGC 2 cut(s) 275, 290
TfiI GAWTC 3 cut(s) 252, 325, 390
TseI GCWGC 3 cut(s) 58, 74, 261
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 3 cut(s) 189, 191, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.