MD11G1026900.v1.1

Histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000501
Physical Location & Seq
Forward (+)
2375254 .. 2375664
411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1026900.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGCACGCACCAAGCAAACCGCCCGGAAATCGACCGGAGGCAAGGCCCCAAGGAAGCAGCTGGCCACCAAGGCCGCCCGGAAGTCTGCTCCGGCGACTGGAGGAGTGAAGAAGCCTCACCGCTTCAGGCCGGGAACGGTGGCGCTGAGAGAGATCAGGAAGTACCAGAAGAGCACCGAGCTCCTGATCCGCAAGTTGCCATTCCAAAGGTTGGTGAGGGAGATCGCCCAGGACTTCAAGACCGATCTGAGGTTCCAGAGCAGCGCCGTGGCGGCGCTCCAGGAGGCGGCGGAGGCGTACTTGGTGGGACTGTTCGAGGACACCAACCTCTGCGCGATCCATGCCAAGAGAGTTACCATTATGCCCAAGGACATCCAGCTCGCTCGGAGGATTAGGGGCGAGAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000501)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09200 AT3G27360 AT5G10390 AT5G10400 AT5G65360
fragaria_vesca FvH4_3g08401 FvH4_3g35371 FvH4_3g39201 FvH4_3g43404 FvH4_5g38881 FvH4_6g43231 FvH4_6g43231
malus_domestica MD00G1200300.v1.1 MD03G1020400.v1.1 MD03G1023100.v1.1 MD05G1308500.v1.1 MD10G1287500.v1.1 MD11G1026900.v1.1
prunus_persica Prupe.4G054300_v2.0.a1 Prupe.6G016200_v2.0.a1 Prupe.6G021100_v2.0.a1 Prupe.6G021700_v2.0.a1
pyrus_communis pycom10g24050 pycom11g01750
rosa_chinensis RchiOBHm_Chr2g0159531 RchiOBHm_Chr5g0009481 RchiOBHm_Chr5g0063481 RchiOBHm_Chr5g0070661 RchiOBHm_Chr5g0077691 RchiOBHm_Chr5g0077731 RchiOBHm_Chr5g0077781 RchiOBHm_Chr5g0077851
rosa_laevigata RLG00000021163 RLG00000031665 RLG00000035639 RLG00000036148 RLG00000036709
rosa_multiflora Rmu_sc0002711.1_g000014 Rmu_sc0002944.1_g000060 Rmu_sc0004168.1_g000003 Rmu_sc0004168.1_g000010 Rmu_sc0004277.1_g000010 Rmu_sc0004277.1_g000017 Rmu_sc0004277.1_g000019 Rmu_sc0005197.1_g000016 Rmu_sc0007856.1_g000002 Rmu_sc0012414.1_g000011 Rmu_sc0016394.1_g000002 Rmu_ssc0000309.1_g000059
rosa_roxburghii Rroxscaffold_1G00004350 Rroxscaffold_1G00010570 Rroxscaffold_1G00017230 Rroxscaffold_2G00090420
rosa_rugosa Rorug02G0476400 Rorug04G0443400 Rorug05G0357600 Rorug05G0407400 Rorug05G0456200 Rorug05G0456600
rosa_samantha Rh2BG556100 Rh2BG556600 Rh2CG526800 Rh2DG565600 Rh5AG510400 Rh5AG510600 Rh5AG510800 Rh5BG070300 Rh5BG431900 Rh5BG481100 Rh5BG532700 Rh5BG532900 Rh5BG533400 Rh5BG533500 Rh5CG082700 Rh5CG455200 Rh5CG505300 Rh5CG556400 Rh5CG556600 Rh5CG556900 Rh5CG557000
rosa_wichuraiana Rw2G044950 Rw5G006900 Rw5G039150 Rw5G043100 Rw5G047360 Rw5G047380 Rw5G047410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 1 cut(s) 335
AciI CCGC 7 cut(s) 21, 75, 121, 190, 272, 287, 290
AclWI GGATC 2 cut(s) 181, 331
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 2 cut(s) 164, 299
AfiI CCNNNNNNNGG 4 cut(s) 98, 211, 249, 286
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 2 cut(s) 228, 279
AluBI AGCT 3 cut(s) 61, 181, 379
AluI AGCT 3 cut(s) 61, 181, 379
Alw21I GWGCWC 2 cut(s) 176, 183
AlwI GGATC 2 cut(s) 181, 331
AoxI GGCC 4 cut(s) 45, 63, 72, 128
ApeKI GCWGC 2 cut(s) 58, 261
AspLEI GCGC 4 cut(s) 145, 266, 277, 335
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 3 cut(s) 25, 79, 132
AsuHPI GGTGA 2 cut(s) 110, 226
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 176, 183
BbvI GCAGC 2 cut(s) 70, 273
BceAI ACGGC 1 cut(s) 251
BciT130I CCWGG 2 cut(s) 230, 281
BcnI CCSGG 3 cut(s) 25, 79, 132
BfoI RGCGCY 3 cut(s) 146, 267, 278
BglI GCCNNNNNGGC 2 cut(s) 71, 272
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 5 cut(s) 25, 79, 132, 230, 281
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 48, 254
BmrFI CCNGG 5 cut(s) 25, 79, 132, 230, 281
BpmI CTGGAG 2 cut(s) 120, 263
BpuMI CCSGG 3 cut(s) 25, 79, 132
BsaJI CCNNGG 5 cut(s) 50, 69, 228, 267, 366
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 211, 249, 286
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 230, 281
BseDI CCNNGG 5 cut(s) 50, 69, 228, 267, 366
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 4 cut(s) 98, 211, 249, 286
BseMII CTCAG 2 cut(s) 137, 239
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 70, 273
Bsh1236I CGCG 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 4 cut(s) 47, 65, 74, 130
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 176, 183
BsiSI CCGG 5 cut(s) 25, 36, 79, 92, 131
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 4 cut(s) 98, 211, 249, 286
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 4 cut(s) 47, 65, 74, 130
Bsp1286I GDGCHC 2 cut(s) 176, 183
Bsp143I GATC 5 cut(s) 153, 186, 222, 244, 336
BspACI CCGC 7 cut(s) 21, 75, 121, 190, 272, 287, 290
BspANI GGCC 4 cut(s) 47, 65, 74, 130
BspCNI CTCAG 2 cut(s) 138, 240
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 48, 254
BspPI GGATC 2 cut(s) 181, 331
BspQI GCTCTTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 5 cut(s) 50, 69, 228, 267, 366
BssMI GATC 5 cut(s) 153, 186, 222, 244, 336
BssT1I CCWWGG 3 cut(s) 50, 69, 366
Bst2UI CCWGG 2 cut(s) 230, 281
Bst4CI ACNGT 2 cut(s) 139, 312
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 7, 63, 381
BstDEI CTNAG 2 cut(s) 146, 248
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 3 cut(s) 146, 267, 278
BstHHI GCGC 4 cut(s) 145, 266, 277, 335
BstKTI GATC 5 cut(s) 156, 189, 225, 247, 339
BstMBI GATC 5 cut(s) 153, 186, 222, 244, 336
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
BstNI CCWGG 2 cut(s) 230, 281
BstSCI CCNGG 5 cut(s) 23, 77, 130, 228, 279
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 70, 273
BsuRI GGCC 4 cut(s) 47, 65, 74, 130
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 372
Cac8I GCNNGC 3 cut(s) 7, 63, 381
CfoI GCGC 4 cut(s) 145, 266, 277, 335
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 163, 298
CviAII CATG 1 cut(s) 341
CviJI RGCY 9 cut(s) 47, 61, 65, 74, 115, 130, 181, 379, 407
CviKI_1 RGCY 9 cut(s) 47, 61, 65, 74, 115, 130, 181, 379, 407
CviQI GTAC 2 cut(s) 163, 298
DdeI CTNAG 2 cut(s) 146, 248
DpnI GATC 5 cut(s) 155, 188, 224, 246, 338
DpnII GATC 5 cut(s) 153, 186, 222, 244, 336
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 3 cut(s) 50, 69, 366
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 228, 279
EcoT14I CCWWGG 3 cut(s) 50, 69, 366
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 50, 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 4 cut(s) 144, 265, 276, 334
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GsuI CTGGAG 2 cut(s) 120, 263
HaeII RGCGCY 3 cut(s) 146, 267, 278
HaeIII GGCC 4 cut(s) 47, 65, 74, 130
HapII CCGG 5 cut(s) 25, 36, 79, 92, 131
HhaI GCGC 4 cut(s) 145, 266, 277, 335
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 143, 264, 275, 333
HinP1I GCGC 4 cut(s) 143, 264, 275, 333
HpaII CCGG 5 cut(s) 25, 36, 79, 92, 131
HphI GGTGA 2 cut(s) 110, 226
Hpy188I TCNGA 2 cut(s) 249, 387
Hpy188III TCNNGA 4 cut(s) 157, 184, 238, 256
HpyCH4III ACNGT 2 cut(s) 139, 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
HpyF3I CTNAG 2 cut(s) 146, 248
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 143, 264, 275, 333
Kzo9I GATC 5 cut(s) 153, 186, 222, 244, 336
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 3 cut(s) 94, 186, 282
Lsp1109I GCAGC 2 cut(s) 70, 273
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 155, 188, 224, 246, 338
MboI GATC 5 cut(s) 153, 186, 222, 244, 336
MboII GAAGA 2 cut(s) 121, 181
MhlI GDGCHC 2 cut(s) 176, 183
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 5 cut(s) 25, 36, 79, 92, 131
MspR9I CCNGG 5 cut(s) 25, 79, 132, 230, 281
MvaI CCWGG 2 cut(s) 230, 281
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 71, 272, 293, 341
NciI CCSGG 3 cut(s) 25, 79, 132
NdeII GATC 5 cut(s) 153, 186, 222, 244, 336
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 254
PciSI GCTCTTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 228, 279
PspGI CCWGG 2 cut(s) 228, 279
PspN4I GGNNCC 2 cut(s) 48, 254
PspPI GGNCC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 164, 299
RsaNI GTAC 2 cut(s) 163, 298
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 5 cut(s) 153, 186, 222, 244, 336
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 5 cut(s) 25, 79, 132, 230, 281
SduI GDGCHC 2 cut(s) 176, 183
SetI ASST 6 cut(s) 63, 183, 212, 254, 330, 381
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SsiI CCGC 7 cut(s) 21, 75, 121, 190, 272, 287, 290
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 23, 77, 130, 228, 279
StyI CCWWGG 3 cut(s) 50, 69, 366
TaaI ACNGT 2 cut(s) 139, 312
TaqI TCGA 2 cut(s) 32, 315
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 3 cut(s) 77, 275, 290
TseI GCWGC 2 cut(s) 58, 261
Van91I CCANNNNNTGG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.