Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

4644521 .. 4647142

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGTTTGTTGGAATCGGTGAAATCAATCAACTGGGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAGTTCTTCCTCTCTTCGCTGTGTTCTTCCCTTCGATTCGATTTCTCCTCGATAGATTCGTCTTCGAGAAATTGGCAAAATATTTGATCTATGGAAAACATAGACAGGATATGGGAGATGACACAACCGAGAGAAAGAAGAAGATCAGGAAATTCAAAGAATCGGCCTGGAAGTGTGTTTACTATCTATCAGCTGAGATTCTTGCTTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCCTGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAGTTGAAGCTTTTGTATATGTTTGTGGCTGGTTTCTATACATACTCCATCTTTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGTGTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

239

Amino Acids

28.2

Weight (kDa)

9.27

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	74 - 280	5e-51	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	670
AclWI	GGATC	3 cut(s)	668, 688, 701
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	226, 379, 471
AjnI	CCWGG	2 cut(s)	236, 334
AluBI	AGCT	5 cut(s)	263, 382, 525, 614, 630
AluI	AGCT	5 cut(s)	263, 382, 525, 614, 630
AlwI	GGATC	3 cut(s)	668, 688, 701
AoxI	GGCC	3 cut(s)	234, 332, 350
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	693
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BbsI	GAAGAC	1 cut(s)	124
BccI	CCATC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BciT130I	CCWGG	2 cut(s)	238, 336
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	1 cut(s)	567
Bme1390I	CCNGG	2 cut(s)	238, 336
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	238, 336
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	602
BsaAI	YACGTR	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	238, 336
BseDI	CCNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	236, 334, 352
BsiSI	CCGG	1 cut(s)	53
BsnI	GGCC	3 cut(s)	236, 334, 352
Bsp143I	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
BspACI	CCGC	1 cut(s)	670
BspANI	GGCC	3 cut(s)	236, 334, 352
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	668, 688, 701
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	238, 336
Bst6I	CTCTTC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	6 cut(s)	159, 216, 343, 358, 663, 696
BstMBI	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
BstNI	CCWGG	2 cut(s)	238, 336
BstSCI	CCNGG	2 cut(s)	236, 334
BstSNI	TACGTA	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	236, 334, 352
Cac8I	GCNNGC	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	6 cut(s)	158, 215, 342, 357, 662, 695
DpnII	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	659
Eco105I	TACGTA	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	236, 334
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	44
FatI	CATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	355
FspBI	CTAG	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	236, 334, 352
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	380, 628
HinfI	GANTC	7 cut(s)	14, 44, 106, 126, 230, 268, 621
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	345, 457
Hpy188III	TCNNGA	5 cut(s)	62, 136, 217, 560, 581
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	516
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
LmnI	GCTCC	1 cut(s)	611
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	6 cut(s)	158, 215, 342, 357, 662, 695
MboI	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
MboII	GAAGA	6 cut(s)	68, 76, 88, 124, 220, 223
MflI	RGATCY	1 cut(s)	693
MluCI	AATT	2 cut(s)	140, 221
MnlI	CCTC	5 cut(s)	90, 128, 441, 577, 683
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	517
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	238, 336
MvaI	CCWGG	2 cut(s)	238, 336
NdeII	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	7 cut(s)	14, 44, 106, 126, 230, 268, 621
Ppu21I	YACGTR	1 cut(s)	517
Psp6I	CCWGG	2 cut(s)	236, 334
PspGI	CCWGG	2 cut(s)	236, 334
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
PsuI	RGATCY	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	6 cut(s)	156, 213, 340, 355, 660, 693
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	238, 336
SetI	ASST	8 cut(s)	265, 384, 519, 527, 588, 616, 632, 713
SfaNI	GCATC	1 cut(s)	553
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SnaBI	TACGTA	1 cut(s)	517
Sse9I	AATT	2 cut(s)	140, 221
SsiI	CCGC	1 cut(s)	670
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	236, 334
StyI	CCWWGG	1 cut(s)	299
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	5 cut(s)	70, 104, 109, 120, 135
TasI	AATT	2 cut(s)	140, 221
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	7 cut(s)	14, 44, 106, 126, 230, 268, 621
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	57, 323, 628
XapI	RAATTY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.