Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

37155226 .. 37156619

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG208700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAACAGGGATGGCTCCTCGCCTGAGGACGATGCCGATTTTAATGTGCCTCAAGAGGAAGGCCGGGGATCCCAAACTAAATGCTTAGTGGCATTAATTGTATCTCGTCCTGAGATGCTTGCCAAGCTGTATGAGGAGATGAATGTTTTCAGTACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCACAAAGCGCCAGGTTGACATCAATGAACATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

74

Amino Acids

8.42

Weight (kDa)

4.67

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	63, 76
AfaI	GTAC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	127, 166
AluI	AGCT	2 cut(s)	127, 166
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	63, 76
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	172
AseI	ATTAAT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	65, 200
BmiI	GGNNCC	2 cut(s)	16, 70
BmrFI	CCNGG	2 cut(s)	65, 200
BmsI	GCATC	2 cut(s)	22, 105
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	15, 102, 153
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	7, 149
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	3 cut(s)	16, 103, 154
BspLI	GGNNCC	2 cut(s)	16, 70
BspPI	GGATC	2 cut(s)	63, 76
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	4 cut(s)	24, 85, 111, 162
BstF5I	GGATG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 172
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	63, 198
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	153
CviJI	RGCY	4 cut(s)	15, 63, 127, 166
CviKI_1	RGCY	4 cut(s)	15, 63, 127, 166
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	24, 85, 111, 162
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	168
FaiI	YATR	2 cut(s)	132, 219
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	173
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	53, 110
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 172
HpyF3I	CTNAG	4 cut(s)	24, 85, 111, 162
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	6 cut(s)	36, 77, 123, 165, 185, 212
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	22, 105
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	96
MnlI	CCTC	5 cut(s)	19, 28, 49, 60, 127
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	2 cut(s)	42, 95
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	65, 200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	124, 172
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	16, 70
NmuCI	GTSAC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	16, 70
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	42, 95
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	65, 200
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	129, 168, 204, 224
SfaNI	GCATC	2 cut(s)	22, 105
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	63, 198
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	42, 95
Tru9I	TTAA	2 cut(s)	42, 95
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	17, 155
TspRI	CASTG	1 cut(s)	166
VspI	ATTAAT	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.