Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

16790790 .. 16793552

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGGAATTGGGTCTGTTTGGAATCAGTGGTTGGGTCAACCTCAGACTCAACTGGGAGGAAGAGTCGTACCCAGTGCCCAAAGACTTTTTGGTCCTTCCTTTGTTTGTTCTTCTCTTCCCTTCACTCAGGCTCTTCCTGGACATTTATGTCTTTGAGGGATTAGCAAGACGCCTTATGTTGGGAAAGCAGCATGCAATGCTGAATGTTGAGACACGCCATCAACGGAAGAAAATTAATAAATTCAAAGAGTCAGCATTTAAATGTGTTTATTTTTTCTCTGCGGAGCTTTTGGCCCTTTCTGTTACGTACAACGAGCCTTGGTTCTCTAAAACCAAATACTTCTGGGTAGGGCCAGGCAATCAGGTTTGGCCCGACCAGAAAACTAAATTAAAATTGAAGGCACTGTACATGTATTCTGCCGGATTCTACATTTACTCCAGCTTTGCTTTGGTGTTCTGGGAAACAAGGCGTTCTGACTTTTTGGTGTCAATGGCTCATCATATAGCAACTACGGTTTTACTTGTGTCATCTTACATATTCAAGTTTTCTCGTGTTGGCTCGATTATTTTAGCCCTCCATGAAGGATGCGATGTGTTCTTAGAGATTGCCAAGTTGTCAAAATATTGTGGCTATGAACTGATGGCCGGCTTTGCTTTTGTTAGTTTTGTTCTTTCTTGGACAGTACTGCGTCTTATTTATTTTCCATTTTGGATAATTTGGAGTACCAGCTACGAGGCTCTTTTGACCTTGGACAAGGAGAAGCACTTGGTGGATGGATCTATATATTATTACTTGTTTAATACTCTTTTACTTTGCTTGCTCATTTGTCATATTTATTGGTGGATGTTGATGGTTCGGATGCTCATGAAGCAAATTCGTGCAAGAGGGAAAATTGATGATGATGTTCGATCTGATTCTGAAGGTGAGGACGAACATAACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

316

Amino Acids

37.14

Weight (kDa)

8.14

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	92, 149
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	2 cut(s)	242, 876
AcuI	CTGAAG	1 cut(s)	942
AcyI	GRCGYC	1 cut(s)	172
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	5 cut(s)	71, 311, 410, 687, 727
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	247, 400, 544
AjnI	CCWGG	2 cut(s)	138, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	3 cut(s)	289, 444, 732
AluI	AGCT	3 cut(s)	289, 444, 732
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	787
AoxI	GGCC	4 cut(s)	294, 353, 371, 645
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	2 cut(s)	242, 876
AseI	ATTAAT	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	94, 295, 353, 372
AsuHPI	GGTGA	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	4 cut(s)	228, 637, 770, 847
BciT130I	CCWGG	2 cut(s)	140, 357
BcoDI	GTCTC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	2 cut(s)	140, 357
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	4 cut(s)	94, 295, 353, 372
BmrFI	CCNGG	2 cut(s)	140, 357
BmrI	ACTGGG	2 cut(s)	64, 68
BmsI	GCATC	2 cut(s)	578, 852
BmuI	ACTGGG	2 cut(s)	64, 68
BpmI	CTGGAG	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	320, 750
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	59, 74
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	140, 357
BseDI	CCNNGG	2 cut(s)	320, 750
BseGI	GGATG	4 cut(s)	593, 781, 852, 867
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	58, 142
BseNI	ACTGG	2 cut(s)	59, 74
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	4 cut(s)	296, 355, 373, 647
BsiSI	CCGG	2 cut(s)	423, 648
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	296, 355, 373, 647
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	779, 911
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	4 cut(s)	296, 355, 373, 647
BspCNI	CTCAG	2 cut(s)	57, 141
BspHI	TCATGA	1 cut(s)	867
BspPI	GGATC	1 cut(s)	787
BspQI	GCTCTTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	59, 74
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	2 cut(s)	320, 750
BssMI	GATC	2 cut(s)	779, 911
BssNI	GRCGYC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	320, 750
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	140, 357
Bst4CI	ACNGT	3 cut(s)	408, 517, 685
Bst6I	CTCTTC	3 cut(s)	57, 122, 140
BstACI	GRCGYC	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	195, 649, 821
BstDEI	CTNAG	3 cut(s)	44, 128, 601
BstF5I	GGATG	4 cut(s)	593, 781, 852, 867
BstKTI	GATC	2 cut(s)	782, 914
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	779, 911
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 653, 871
BstNI	CCWGG	2 cut(s)	140, 357
BstNSI	RCATGY	2 cut(s)	197, 415
BstSCI	CCNGG	2 cut(s)	138, 355
BstSLI	GKGCMC	1 cut(s)	81
BstSNI	TACGTA	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
BsuRI	GGCC	4 cut(s)	296, 355, 373, 647
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	4 cut(s)	593, 781, 852, 867
BtsIMutI	CAGTG	3 cut(s)	34, 81, 404
Cac8I	GCNNGC	3 cut(s)	195, 649, 821
CciI	TCATGA	1 cut(s)	867
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	4 cut(s)	94, 295, 353, 372
CseI	GACGC	2 cut(s)	180, 680
Csp6I	GTAC	5 cut(s)	70, 310, 409, 686, 726
CviAII	CATG	4 cut(s)	194, 412, 581, 868
CviQI	GTAC	5 cut(s)	70, 310, 409, 686, 726
DdeI	CTNAG	3 cut(s)	44, 128, 601
DpnI	GATC	2 cut(s)	781, 913
DpnII	GATC	2 cut(s)	779, 911
DraI	TTTAAA	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	772
DrdI	GACNNNNNNGTC	2 cut(s)	92, 149
DseDI	GACNNNNNNGTC	2 cut(s)	92, 149
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	3 cut(s)	57, 122, 140
EarI	CTCTTC	3 cut(s)	57, 122, 140
Eco105I	TACGTA	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	320, 750
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	138, 355
EcoT14I	CCWWGG	2 cut(s)	320, 750
ErhI	CCWWGG	2 cut(s)	320, 750
FaeI	CATG	4 cut(s)	197, 415, 584, 871
FatI	CATG	4 cut(s)	193, 411, 580, 867
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	4 cut(s)	600, 788, 859, 874
Fsp4HI	GCNGC	1 cut(s)	191
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	4 cut(s)	296, 355, 373, 647
HapII	CCGG	2 cut(s)	423, 648
HgaI	GACGC	2 cut(s)	180, 680
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	197, 415, 584, 871
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	6 cut(s)	24, 48, 65, 251, 426, 917
HpaII	CCGG	2 cut(s)	423, 648
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	47, 478, 861, 916, 922
Hpy188III	TCNNGA	1 cut(s)	868
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	5 cut(s)	107, 132, 394, 578, 917
HpyCH4III	ACNGT	3 cut(s)	408, 517, 685
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	197, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 653, 871
HpyF3I	CTNAG	3 cut(s)	44, 128, 601
HpySE526I	ACGT	1 cut(s)	308
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	197, 415, 584, 871
KroI	GCCGGC	1 cut(s)	647
KroNI	GCCGGC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	779, 911
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	578, 852
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	781, 913
MboI	GATC	2 cut(s)	779, 911
MboII	GAAGA	5 cut(s)	74, 104, 109, 127, 241
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	8 cut(s)	8, 234, 242, 389, 395, 717, 876, 894
MlyI	GAGTC	3 cut(s)	42, 74, 260
MnlI	CCTC	7 cut(s)	52, 53, 151, 587, 730, 881, 922
MroNI	GCCGGC	1 cut(s)	647
MseI	TTAA	4 cut(s)	237, 261, 392, 801
MslI	CAYNNNNRTG	1 cut(s)	262
MspI	CCGG	2 cut(s)	423, 648
MspR9I	CCNGG	2 cut(s)	140, 357
MvaI	CCWGG	2 cut(s)	140, 357
MwoI	GCNNNNNNNGC	3 cut(s)	199, 653, 871
NaeI	GCCGGC	1 cut(s)	649
NdeII	GATC	2 cut(s)	779, 911
NgoMIV	GCCGGC	1 cut(s)	647
NlaIII	CATG	4 cut(s)	197, 415, 584, 871
NspI	RCATGY	2 cut(s)	197, 415
PaeI	GCATGC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	867
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PdiI	GCCGGC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	24, 426, 917
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	3 cut(s)	42, 73, 259
PpsI	GAGTC	3 cut(s)	42, 73, 259
Ppu21I	YACGTR	1 cut(s)	309
PscI	ACATGT	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	138, 355
PspGI	CCWGG	2 cut(s)	138, 355
PspPI	GGNCC	4 cut(s)	94, 295, 353, 372
PsuI	RGATCY	1 cut(s)	779
RsaI	GTAC	5 cut(s)	71, 311, 410, 687, 727
RsaNI	GTAC	5 cut(s)	70, 310, 409, 686, 726
RseI	CAYNNNNRTG	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	237, 261, 392, 801
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	2 cut(s)	779, 911
Sau96I	GGNCC	4 cut(s)	94, 295, 353, 372
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	3 cut(s)	42, 74, 260
ScrFI	CCNGG	2 cut(s)	140, 357
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	45, 291, 311, 369, 446, 734, 752, 928
SfaNI	GCATC	2 cut(s)	578, 852
SinI	GGWCC	1 cut(s)	94
SmiI	ATTTAAAT	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	309
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	8 cut(s)	8, 234, 242, 389, 395, 717, 876, 894
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	138, 355
StyI	CCWWGG	2 cut(s)	320, 750
SwaI	ATTTAAAT	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	408, 517, 685
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	563, 910
TasI	AATT	8 cut(s)	8, 234, 242, 389, 395, 717, 876, 894
TatI	WGTACW	2 cut(s)	408, 685
TfiI	GAWTC	3 cut(s)	24, 426, 917
Tru1I	TTAA	4 cut(s)	237, 261, 392, 801
Tru9I	TTAA	4 cut(s)	237, 261, 392, 801
TscAI	CASTG	3 cut(s)	34, 81, 411
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	597, 651, 884
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	3 cut(s)	34, 81, 411
VpaK11BI	GGWCC	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	2 cut(s)	242, 876
XceI	RCATGY	2 cut(s)	197, 415
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 448
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.