Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

58776026 .. 58778449

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTCAGTTGTATAATCTTGATGAACTCCATGTAACTGAAGAAATGCCTGTGAGAGCAAATAAGAGAAGCTGTGGTGTTGCATCTGAAGACAAAAAGCTGGAGCTGAGGTTGGGTCCTCCAGGAGATCAAGAACAGTCTGTTCACTCCCAGCTTGGTTTCATTAGTTCTAATCCTGAAGCCAAAAGAGTCTGTCATGACTTACAAGTTAAGGCCAAAAATGAAGAGACAAAGTGGTTGGCAAACACTGCTCAGCATCAGCCAAAGTCTTCCTATTTCCAGTACCCAATGATTCCTCATCCAGATAAGAAAGCGTGTTCAGATCCTGCCACTGCTTCAAAATTTCCCATTTCGGCTGCAGCAAATGGCTCTGATGAGAAAAGTAAAAGCAGAATTGCACAAGCTCCGGTAGTTGGGTGGCCTCCAGTCCGTTCATTCAGAAAAAATCTTGCAAACAAGAGCCTCGCGAAGGCGGCTTCGGATCAGCCACCACTTGAGACTTTGCAGGAGGAGAGTAAAGGAAAATCCGCAGAGAGTAGTACCAAAGAGCATATGTTTGTGAAGATCAACATGGAAGGGGTTCCCATTGGAAGAAAAGTTAACCTCAAAGCCTATGATAGTTATGAGAAGCTCTCCTCTGCCATAGATCACCTCTTCCAAGGTCTTCTTGCTGCTCAAAGAGATCATTCTGCTGTTGAAAAAGAGAACAAGGAAGAGACCAAAGCAATTAGTGATTCATATACTCTACTCTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACGGCAAAGAGGCTACGTGTGCTAAAGAGCTCAGAGCTATCCACTCTACGACTTAGCAGCAGTCGGCATGAAAAGACACCACTCGAGTCTGCCATGGAAAATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

307

Amino Acids

34.15

Weight (kDa)

8.26

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	34 - 287	2e-61	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	473, 528
AclWI	GGATC	2 cut(s)	317, 489
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	3 cut(s)	60, 108, 198
AfaI	GTAC	2 cut(s)	284, 541
AfiI	CCNNNNNNNGG	2 cut(s)	413, 469
AflIII	ACRYGT	2 cut(s)	801, 829
AgsI	TTSAA	2 cut(s)	339, 698
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	8 cut(s)	72, 100, 106, 154, 404, 631, 843, 850
AluI	AGCT	8 cut(s)	72, 100, 106, 154, 404, 631, 843, 850
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	4 cut(s)	221, 491, 710, 762
AlwI	GGATC	2 cut(s)	317, 489
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	2 cut(s)	213, 419
ApeKI	GCWGC	4 cut(s)	356, 359, 671, 870
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	641, 797
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	845
BbsI	GAAGAC	3 cut(s)	96, 261, 656
Bbv12I	GWGCWC	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	343, 371, 658, 882
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	4 cut(s)	221, 491, 710, 762
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	5 cut(s)	357, 360, 474, 672, 871
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	5 cut(s)	358, 361, 475, 673, 872
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	117, 582
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	92, 265, 765
BpiI	GAAGAC	3 cut(s)	96, 261, 656
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	3 cut(s)	105, 122, 408
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	4 cut(s)	658, 794, 813, 906
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 469
Bse1I	ACTGG	2 cut(s)	280, 425
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	4 cut(s)	658, 794, 813, 906
BseGI	GGATG	2 cut(s)	298, 780
BseLI	CCNNNNNNNGG	2 cut(s)	413, 469
BseMII	CTCAG	3 cut(s)	98, 266, 858
BseNI	ACTGG	2 cut(s)	280, 425
BseRI	GAGGAG	2 cut(s)	524, 625
BseXI	GCAGC	4 cut(s)	343, 371, 658, 882
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	215, 421
BsiHKAI	GWGCWC	1 cut(s)	845
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	413, 469
BsmAI	GTCTC	4 cut(s)	221, 491, 710, 762
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	2 cut(s)	215, 421
Bso31I	GGTCTC	1 cut(s)	710
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp143I	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	2 cut(s)	794, 906
Bsp68I	TCGCGA	1 cut(s)	467
BspACI	CCGC	2 cut(s)	473, 528
BspANI	GGCC	2 cut(s)	215, 421
BspCNI	CTCAG	3 cut(s)	99, 265, 857
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	117, 582
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	317, 489
BspTNI	GGTCTC	1 cut(s)	710
BsrI	ACTGG	2 cut(s)	280, 425
BssECI	CCNNGG	4 cut(s)	658, 794, 813, 906
BssMI	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
BssT1I	CCWWGG	3 cut(s)	658, 794, 906
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	3 cut(s)	219, 659, 708
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	830
BstDEI	CTNAG	4 cut(s)	107, 252, 844, 866
BstDSI	CCRYGG	3 cut(s)	794, 813, 906
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	298, 780
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	6 cut(s)	130, 325, 484, 567, 649, 685
BstMAI	GTCTC	4 cut(s)	221, 491, 710, 762
BstMBI	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 473, 832
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	343, 371, 658, 882
BstV2I	GAAGAC	3 cut(s)	96, 261, 656
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	215, 421
BtgI	CCRYGG	3 cut(s)	794, 813, 906
BtsCI	GGATG	2 cut(s)	298, 780
BtsI	GCAGTG	2 cut(s)	246, 330
BtsIMutI	CAGTG	2 cut(s)	246, 330
BtuMI	TCGCGA	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	326
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	283, 540
CviAII	CATG	7 cut(s)	32, 197, 571, 795, 802, 881, 907
CviQI	GTAC	2 cut(s)	283, 540
DdeI	CTNAG	4 cut(s)	107, 252, 844, 866
DpnI	GATC	6 cut(s)	129, 324, 483, 566, 648, 684
DpnII	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
Eam1104I	CTCTTC	3 cut(s)	219, 659, 708
EarI	CTCTTC	3 cut(s)	219, 659, 708
Ecl136II	GAGCTC	1 cut(s)	843
Eco130I	CCWWGG	3 cut(s)	658, 794, 906
Eco24I	GRGCYC	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	843
Eco57I	CTGAAG	3 cut(s)	60, 108, 198
Eco88I	CYCGRG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	843
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	3 cut(s)	658, 794, 906
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	3 cut(s)	658, 794, 906
FaeI	CATG	7 cut(s)	35, 200, 574, 798, 805, 884, 910
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	7 cut(s)	31, 196, 570, 794, 801, 880, 906
FauNDI	CATATG	1 cut(s)	552
Fnu4HI	GCNGC	5 cut(s)	357, 360, 474, 672, 871
FokI	GGATG	2 cut(s)	285, 787
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	5 cut(s)	357, 360, 474, 672, 871
GluI	GCNGC	5 cut(s)	357, 360, 474, 672, 871
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	3 cut(s)	105, 122, 408
HaeIII	GGCC	2 cut(s)	215, 421
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	7 cut(s)	35, 200, 574, 798, 805, 884, 910
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	4 cut(s)	189, 292, 734, 899
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	2 cut(s)	641, 797
Hpy166II	GTNNAC	2 cut(s)	145, 601
Hpy188I	TCNGA	6 cut(s)	88, 322, 373, 440, 481, 847
Hpy188III	TCNNGA	6 cut(s)	20, 131, 176, 197, 302, 466
Hpy8I	GTNNAC	2 cut(s)	145, 601
HpyAV	CCTTC	3 cut(s)	463, 569, 758
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	5 cut(s)	83, 359, 398, 452, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 473, 832
HpyF3I	CTNAG	4 cut(s)	107, 252, 844, 866
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	7 cut(s)	35, 200, 574, 798, 805, 884, 910
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
LmnI	GCTCC	2 cut(s)	103, 409
Lsp1109I	GCAGC	4 cut(s)	343, 371, 658, 882
LweI	GCATC	3 cut(s)	92, 265, 765
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	129, 324, 483, 566, 648, 684
MboI	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
MboII	GAAGA	9 cut(s)	53, 101, 236, 261, 574, 603, 646, 656, 725
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	845
MluCI	AATT	3 cut(s)	341, 393, 726
MlyI	GAGTC	2 cut(s)	198, 908
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	2 cut(s)	210, 600
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	248, 473, 832
NcoI	CCATGG	2 cut(s)	794, 906
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
NlaIII	CATG	7 cut(s)	35, 200, 574, 798, 805, 884, 910
NlaIV	GGNNCC	2 cut(s)	117, 582
NruI	TCGCGA	1 cut(s)	467
NspI	RCATGY	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	896
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	292, 734
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	358, 361, 475, 673, 872
PleI	GAGTC	2 cut(s)	197, 907
PpsI	GAGTC	2 cut(s)	197, 907
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	116
PscI	ACATGT	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	117, 582
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PspXI	VCTCGAGB	1 cut(s)	896
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	322
RruI	TCGCGA	1 cut(s)	467
RsaI	GTAC	2 cut(s)	284, 541
RsaNI	GTAC	2 cut(s)	283, 540
SacI	GAGCTC	1 cut(s)	845
SaqAI	TTAA	2 cut(s)	210, 600
SatI	GCNGC	5 cut(s)	357, 360, 474, 672, 871
Sau3AI	GATC	6 cut(s)	127, 322, 481, 564, 646, 682
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	198, 908
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	845
SfaNI	GCATC	3 cut(s)	92, 265, 765
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	896
SinI	GGWCC	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	494, 896
SmoI	CTYRAG	2 cut(s)	494, 896
Sse9I	AATT	3 cut(s)	341, 393, 726
SsiI	CCGC	2 cut(s)	473, 528
SstI	GAGCTC	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	3 cut(s)	658, 794, 906
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	1 cut(s)	897
TasI	AATT	3 cut(s)	341, 393, 726
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	292, 734
Tru1I	TTAA	2 cut(s)	210, 600
Tru9I	TTAA	2 cut(s)	210, 600
TscAI	CASTG	2 cut(s)	253, 337
TseI	GCWGC	4 cut(s)	356, 359, 671, 870
TspDTI	ATGAA	7 cut(s)	39, 151, 237, 423, 726, 777, 897
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	253, 337
VpaK11BI	GGWCC	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.