Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

58793744 .. 58794643

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0462000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGTTGTTCAGTTGCAAGACTTACTGCATATGACTATAGGTATTACTTTACTTGTGGACCTGTGGGACCTTCTCAACAGAACATAAACTTAGAGAAAATGATAAATGCACATGCAACTACTTCTCAGTCACAACAATCAAGTAGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGAAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTGGTGGCTGAAGGGAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCATTGTGTGCCTCTTGGACGAGATTGTTGGAAGGTTTGGGTTGACGTGGTGTTTGATGAGTATCAGACTATGGAAGTGTATAGAGCAACCATGGATGCCAAACAACTTGGTGAAGCTGTAGGAAGCACTCTTGCATGGCCCAAAAGCTCCATTAAAATGCTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

146

Amino Acids

16.45

Weight (kDa)

5.66

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	60 - 144	6.5e-15	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	176, 199, 252
AjiI	CACGTC	1 cut(s)	319
AluBI	AGCT	2 cut(s)	389, 420
AluI	AGCT	2 cut(s)	389, 420
Alw21I	GWGCWC	1 cut(s)	193
Alw44I	GTGCAC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	3 cut(s)	59, 68, 411
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	59, 68
BaeGI	GKGCMC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BfmI	CTRYAG	2 cut(s)	37, 390
BglII	AGATCT	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	59, 68
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	3 cut(s)	59, 68, 411
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	373
BseJI	GATNNNNATC	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	169, 243
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	169, 243
BssT1I	CCWWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	91, 126, 438
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	172, 246
BstMBI	GATC	2 cut(s)	169, 243
BstNSI	RCATGY	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	37, 390
BstSLI	GKGCMC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	59, 68, 411
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	3 cut(s)	113, 364, 408
CviJI	RGCY	4 cut(s)	233, 389, 412, 420
CviKI_1	RGCY	4 cut(s)	233, 389, 412, 420
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	91, 126, 438
DpnI	GATC	2 cut(s)	171, 245
DpnII	GATC	2 cut(s)	169, 243
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	59, 68
Eco57I	CTGAAG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	116, 367, 411
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	112, 363, 407
FauNDI	CATATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	145
FokI	GGATG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	412
Hin1II	CATG	3 cut(s)	116, 367, 411
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	59, 146, 191, 316
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	4 cut(s)	59, 146, 191, 316
HpyAV	CCTTC	3 cut(s)	81, 230, 298
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	6 cut(s)	17, 29, 110, 116, 191, 407
HpyF3I	CTNAG	3 cut(s)	91, 126, 438
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	116, 367, 411
Kzo9I	GATC	2 cut(s)	169, 243
LmnI	GCTCC	3 cut(s)	163, 425, 438
LpnPI	CCDG	1 cut(s)	75
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	2 cut(s)	171, 245
MboI	GATC	2 cut(s)	169, 243
MboII	GAAGA	5 cut(s)	195, 227, 230, 240, 253
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	199, 208
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	169, 243
NlaIII	CATG	3 cut(s)	116, 367, 411
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	59, 68, 411
PspPPI	RGGWCCY	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	169, 243
Sau96I	GGNCC	3 cut(s)	59, 68, 411
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	44, 64, 73, 309, 321, 391, 422
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	37, 390
SinI	GGWCC	2 cut(s)	59, 68
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	199, 208
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	321
TasI	AATT	2 cut(s)	199, 208
TatI	WGTACW	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	3 cut(s)	228, 237, 263
VneI	GTGCAC	1 cut(s)	189
VpaK11BI	GGWCC	2 cut(s)	59, 68
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.