Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

29428803 .. 29432822

Gene Structure 4020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G298900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGTTTGACTGAATACTTGAGGTCAATCGATTGGGAGCAAGAAGCGTACCCAGCATATGAAGATTTCACAATTCTTCTTTTGTTTATCCTCTACTTCCCAACTGTCCGATTTTTTCTGGATAAATTCGTCTTTGAGAGATTGGGGAGACGGTTAATTTTTGGAAAGGGGCATGAGAAGCTGGATTTACAATCTGAAGAACAAAGGAAGAAGATTAGAAAATTCAAGGAGTCAGCATGGAAGTTCACATATTTTCTTTCAGCAGAGCTTCTAGTCCTTTCTGTAACTTATGATGAGCCTTGGTTTACTAATACAAAATACTTTTGGGTAGGGCCAGGAGACCAGGTCTGGCCTGACCAGAAAATGAAGTTGAGATTGAAGGGAGTGTATATGTATGCTGCTGGATTTTACACATACTCCATATTTGCTTTGATTTTCTGGGAAACAAGGCGTACAGATTTTGGGGTGTCCATGGGCCATCATGTAGCAACAGTCATTCTCATTCTGCTGTCTTACATTTTCAGGTTTGCCCGCGTAGGTTCAATTGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTCTGGAGGTCGGGAAGATGTCCAAATACAGTGGTGCTGAAAGGACTGCCAGCTTTTCATTTATTCTTTTTGTATTGTCTTGGATCATACTGCGTCTCATTTATTATCCATTCTGGATCCTTCGGAGTACAAGCTACGAAGTTATCCTGGCATTGGACAAGAACAAGCATTCTATAGAAGGACCAATATATTACTATGTGTTCAATACTCTTCTATACTGCTTACTTGTTTTTCACATTTTCTGGTGGGTGTTGATTTATCGGATGCTTGTTAAACAAATCCAAGCAAGAGGGCAGCTTAGTGATGATGTGCGATCAGATTCTGAAGGTGAAGACGACCATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

309

Amino Acids

36.67

Weight (kDa)

6.67

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	534
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	3 cut(s)	668, 688, 701
AcsI	RAATTY	2 cut(s)	125, 221
AcuI	CTGAAG	2 cut(s)	216, 921
AfaI	GTAC	3 cut(s)	50, 454, 706
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	4 cut(s)	226, 379, 543, 781
AjnI	CCWGG	3 cut(s)	334, 342, 723
AluBI	AGCT	6 cut(s)	181, 268, 554, 630, 711, 874
AluI	AGCT	6 cut(s)	181, 268, 554, 630, 711, 874
Alw26I	GTCTC	3 cut(s)	142, 333, 677
AlwI	GGATC	3 cut(s)	668, 688, 701
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	3 cut(s)	332, 350, 475
ApeKI	GCWGC	2 cut(s)	398, 871
ApoI	RAATTY	2 cut(s)	125, 221
AspS9I	GGNCC	3 cut(s)	332, 475, 758
AsuHPI	GGTGA	1 cut(s)	917
AvaII	GGWCC	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	915
BbvI	GCAGC	2 cut(s)	385, 883
BccI	CCATC	1 cut(s)	486
BciT130I	CCWGG	3 cut(s)	336, 344, 725
BcoDI	GTCTC	3 cut(s)	142, 333, 677
BfaI	CTAG	2 cut(s)	272, 567
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	2 cut(s)	399, 872
BlsI	GCNGC	2 cut(s)	400, 873
Bme1390I	CCNGG	3 cut(s)	336, 344, 725
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	332, 475, 758
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	3 cut(s)	336, 344, 725
BmsI	GCATC	2 cut(s)	553, 831
BpiI	GAAGAC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	299, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
BseBI	CCWGG	3 cut(s)	336, 344, 725
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	299, 471
BseGI	GGATG	1 cut(s)	846
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	385, 883
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	334, 352, 477
BshVI	ATCGAT	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	3 cut(s)	142, 333, 677
BsmBI	CGTCTC	2 cut(s)	142, 677
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	3 cut(s)	334, 352, 477
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	660, 693, 890
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	3 cut(s)	334, 352, 477
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	668, 688, 701
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	299, 471
BssMI	GATC	3 cut(s)	660, 693, 890
BssT1I	CCWWGG	2 cut(s)	299, 471
Bst2UI	CCWGG	3 cut(s)	336, 344, 725
Bst4CI	ACNGT	4 cut(s)	106, 153, 493, 608
Bst6I	CTCTTC	2 cut(s)	561, 792
BstC8I	GCNNGC	2 cut(s)	532, 628
BstDEI	CTNAG	1 cut(s)	875
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	846
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	3 cut(s)	663, 696, 893
BstMAI	GTCTC	3 cut(s)	142, 333, 677
BstMBI	GATC	3 cut(s)	660, 693, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 178
BstNI	CCWGG	3 cut(s)	336, 344, 725
BstSCI	CCNGG	3 cut(s)	334, 342, 723
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	385, 883
BstV2I	GAAGAC	1 cut(s)	915
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	334, 352, 477
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	846
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	532, 628
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	3 cut(s)	332, 475, 758
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	659
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	49, 453, 705
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	6 cut(s)	173, 237, 472, 482, 560, 917
CviQI	GTAC	3 cut(s)	49, 453, 705
DdeI	CTNAG	1 cut(s)	875
DpnI	GATC	3 cut(s)	662, 695, 892
DpnII	GATC	3 cut(s)	660, 693, 890
Eam1104I	CTCTTC	2 cut(s)	561, 792
EarI	CTCTTC	2 cut(s)	561, 792
Eco130I	CCWWGG	2 cut(s)	299, 471
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	2 cut(s)	216, 921
EcoRII	CCWGG	3 cut(s)	334, 342, 723
EcoT14I	CCWWGG	2 cut(s)	299, 471
ErhI	CCWWGG	2 cut(s)	299, 471
Esp3I	CGTCTC	2 cut(s)	142, 677
FaeI	CATG	6 cut(s)	176, 240, 475, 485, 563, 920
FatI	CATG	6 cut(s)	172, 236, 471, 481, 559, 916
FauI	CCCGC	1 cut(s)	539
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	399, 872
FokI	GGATG	1 cut(s)	853
Fsp4HI	GCNGC	2 cut(s)	399, 872
FspBI	CTAG	2 cut(s)	272, 567
GluI	GCNGC	2 cut(s)	399, 872
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	334, 352, 477
HgaI	GACGC	1 cut(s)	659
Hin1II	CATG	6 cut(s)	176, 240, 475, 485, 563, 920
HinfI	GANTC	2 cut(s)	230, 896
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	2 cut(s)	246, 306
Hpy188I	TCNGA	6 cut(s)	110, 196, 702, 840, 895, 901
Hpy188III	TCNNGA	5 cut(s)	119, 560, 581, 589, 691
Hpy8I	GTNNAC	2 cut(s)	246, 306
HpyAV	CCTTC	4 cut(s)	373, 707, 749, 896
HpyCH4III	ACNGT	4 cut(s)	106, 153, 493, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 178
HpyF3I	CTNAG	1 cut(s)	875
Hsp92II	CATG	6 cut(s)	176, 240, 475, 485, 563, 920
Kzo9I	GATC	3 cut(s)	660, 693, 890
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	385, 883
LweI	GCATC	2 cut(s)	553, 831
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	2 cut(s)	272, 567
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	662, 695, 892
MboI	GATC	3 cut(s)	660, 693, 890
MboII	GAAGA	9 cut(s)	68, 74, 209, 220, 223, 548, 604, 779, 920
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	693
MluCI	AATT	5 cut(s)	72, 125, 156, 221, 543
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	15, 101, 577, 860
MseI	TTAA	2 cut(s)	155, 849
MspR9I	CCNGG	3 cut(s)	336, 344, 725
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	3 cut(s)	336, 344, 725
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	53, 178
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	3 cut(s)	660, 693, 890
NlaIII	CATG	6 cut(s)	176, 240, 475, 485, 563, 920
NlaIV	GGNNCC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	896
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	400, 873
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	334, 342, 723
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	3 cut(s)	334, 342, 723
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	3 cut(s)	332, 475, 758
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	693
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	3 cut(s)	50, 454, 706
RsaNI	GTAC	3 cut(s)	49, 453, 705
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	155, 849
SatI	GCNGC	2 cut(s)	399, 872
Sau3AI	GATC	3 cut(s)	660, 693, 890
Sau96I	GGNCC	3 cut(s)	332, 475, 758
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	336, 344, 725
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	553, 831
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	5 cut(s)	72, 125, 156, 221, 543
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	2 cut(s)	272, 567
StyD4I	CCNGG	3 cut(s)	334, 342, 723
StyI	CCWWGG	2 cut(s)	299, 471
TaaI	ACNGT	4 cut(s)	106, 153, 493, 608
TaqI	TCGA	1 cut(s)	30
TasI	AATT	5 cut(s)	72, 125, 156, 221, 543
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	896
Tru1I	TTAA	2 cut(s)	155, 849
Tru9I	TTAA	2 cut(s)	155, 849
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	2 cut(s)	398, 871
TspDTI	ATGAA	4 cut(s)	75, 380, 548, 624
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	2 cut(s)	125, 221
XspI	CTAG	2 cut(s)	272, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.