Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

58445055 .. 58448959

Gene Structure 3905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAGAAACTGGGGAGACGGTTAATATTTGGAAGGGGTATTGGCTGCTGGATGTTAAAACTGATGATCAAAAGAGGAAGATTAGAAAATTCAAGGAATCAGCATGGAAGTGCATCTACTTTCTTTCAGCAGAGTTTCTGGCTCTTTCTGTAACTTATAATGAGCCTTGGTTTACAAATACAAAGAACTTTTGGGTAGGGCCAGGAGATCAGGTTTGGCCTGACCAGAAGACAAAGTTGAAGTTGAAGGGGGTATATATGTATTGTGCTGGATTTTACACATACTCCATATTTGCTTTGATTTTCTGGGAAACAAGGCGTTCCGACTTTGGAGTTTCAATGGGGCATCATGTAGCAACTGTCATTCTCATTCTGCTGTCTTACATTTTCAGGTTTGCCCGTGTAGGTTCAGTTGTTTTAGCTCTTCATGATGCCAGTGACGTGTTTCTGGAAGTAGGGAAGATGTCCAAATACAGTGGTGCTGAAAGGACTGCTAGCTTTTCATTTATTCTTTTTGTATTGTCTTGGGTCATACTGCGTCTCATTTACTATCCATTCTGGATCCTTTGGAGCACAAGCTATGAAGTTATCCTGACATTGGACAAGGAAAACCACGCCGTAGATGGACCAATATATTACTATGTATTCAATAGTCTTCTGTATTGCTTGCTTGTTCTTCACATATACTGGTGGGTGTTGATGTACCGGATGCTTGTTAAACAAATTCAAGCAAGAGGCCAGCTTAGTGATGATGTTCGATCAGATTCTGAAGCTGAAGATGACCATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

264

Amino Acids

31.07

Weight (kDa)

6.31

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	30 - 236	1.2e-49	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AclWI	GGATC	2 cut(s)	556, 569
AcsI	RAATTY	2 cut(s)	89, 723
AcuI	CTGAAG	2 cut(s)	789, 795
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	6 cut(s)	94, 241, 247, 339, 649, 728
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	422, 498, 579, 742, 773
AluI	AGCT	5 cut(s)	422, 498, 579, 742, 773
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	2 cut(s)	11, 545
AlwI	GGATC	2 cut(s)	556, 569
AlwNI	CAGNNNCTG	2 cut(s)	11, 767
AoxI	GGCC	3 cut(s)	200, 218, 736
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	89, 723
AspS9I	GGNCC	2 cut(s)	200, 626
AsuNHI	GCTAGC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	626
BamHI	GGATCC	1 cut(s)	561
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbsI	GAAGAC	2 cut(s)	236, 647
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	204
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	11, 545
BfaI	CTAG	1 cut(s)	495
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	626
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	200, 626
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	4 cut(s)	123, 355, 421, 699
BmtI	GCTAGC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	236, 647
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	3 cut(s)	16, 435, 692
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	58, 714
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseNI	ACTGG	3 cut(s)	16, 435, 692
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	3 cut(s)	202, 220, 738
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	2 cut(s)	11, 545
BsmBI	CGTCTC	2 cut(s)	11, 545
BsnI	GGCC	3 cut(s)	202, 220, 738
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	67, 208, 561, 758
BspANI	GGCC	3 cut(s)	202, 220, 738
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	563
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	556, 569
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	16, 435, 692
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	4 cut(s)	67, 208, 561, 758
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	22, 361, 476
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	496, 668, 740
BstDEI	CTNAG	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	58, 714
BstKTI	GATC	4 cut(s)	70, 211, 564, 761
BstMAI	GTCTC	2 cut(s)	11, 545
BstMBI	GATC	4 cut(s)	67, 208, 561, 758
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	236, 647
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	202, 220, 738
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	58, 714
BtsIMutI	CAGTG	2 cut(s)	442, 481
Cac8I	GCNNGC	3 cut(s)	496, 668, 740
CaiI	CAGNNNCTG	2 cut(s)	11, 767
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	200, 626
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	703
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	4 cut(s)	105, 350, 428, 785
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	4 cut(s)	69, 210, 563, 760
DpnII	GATC	4 cut(s)	67, 208, 561, 758
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	2 cut(s)	789, 795
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	2 cut(s)	11, 545
FaeI	CATG	4 cut(s)	108, 353, 431, 788
FatI	CATG	4 cut(s)	104, 349, 427, 784
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	65, 721
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	202, 220, 738
HapII	CCGG	1 cut(s)	706
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	4 cut(s)	108, 353, 431, 788
HinfI	GANTC	2 cut(s)	98, 764
HpaII	CCGG	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	3 cut(s)	325, 763, 769
Hpy188III	TCNNGA	4 cut(s)	428, 449, 559, 592
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	2 cut(s)	28, 241
HpyCH4III	ACNGT	3 cut(s)	22, 361, 476
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	743
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	108, 353, 431, 788
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	67, 208, 561, 758
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	4 cut(s)	123, 355, 421, 699
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	151, 437
MalI	GATC	4 cut(s)	69, 210, 563, 760
MboI	GATC	4 cut(s)	67, 208, 561, 758
MboII	GAAGA	7 cut(s)	91, 241, 416, 472, 647, 668, 788
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	2 cut(s)	89, 723
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	2 cut(s)	69, 728
MseI	TTAA	3 cut(s)	24, 57, 717
MslI	CAYNNNNRTG	1 cut(s)	109
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	4 cut(s)	67, 208, 561, 758
NheI	GCTAGC	1 cut(s)	494
NlaIII	CATG	4 cut(s)	108, 353, 431, 788
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	98, 764
PkrI	GCNGC	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	2 cut(s)	200, 626
PstNI	CAGNNNCTG	2 cut(s)	11, 767
PsuI	RGATCY	1 cut(s)	561
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
RseI	CAYNNNNRTG	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	24, 57, 717
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	4 cut(s)	67, 208, 561, 758
Sau96I	GGNCC	2 cut(s)	200, 626
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	9 cut(s)	216, 395, 409, 424, 444, 500, 581, 744, 775
SfaNI	GCATC	4 cut(s)	123, 355, 421, 699
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	89, 723
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	22, 361, 476
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	757
TasI	AATT	2 cut(s)	89, 723
TfiI	GAWTC	2 cut(s)	98, 764
Tru1I	TTAA	3 cut(s)	24, 57, 717
Tru9I	TTAA	3 cut(s)	24, 57, 717
TscAI	CASTG	2 cut(s)	442, 481
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	3 cut(s)	416, 492, 597
TspRI	CASTG	2 cut(s)	442, 481
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	2 cut(s)	89, 723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.