Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

9274335 .. 9276685

Gene Structure 2351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTCTCTTCGAATCGGTGAAATCAATCGATTGGGAACAAGAATCGTTCCCAACTTATCAAGATTTAGGGTTTTTGCCTCTCTTTGCAGTGTTCTTCCCTACAATTCGATTTCTACTTGACAGATTCGTCTTCGAGAAATTGGCAAGTCTTGTGATCTATGGAAGGATGAGTACGAATAAGAGTGACAACATAAAAGACAGGAAGAAAAATAGTCCAAAAGTTCGAAAATTTAAAGAATCAGCTTGGAAGTGTATTTACTATCTATCAGCTGAGCTACTTGCTTTATCTGTCACATATAATGAACCTTGGTTTTCAAATACTCTCTACTTTTGGATTGGTCCTGGAGATCAGATTTGGCCTGATCAACCAATGAAGATGAAGTTGAAGTTTTTATATATGTTTGCTGCTGGATTCTACACGTACTCTATATTCGCGTTGGTGTTTTGGGAAACAAGACGGTCTGATTTCGGAGTTTCCATGGGTCATCATATCACAACGCTTGTTCTCATTGTCCTCTCCTATATCTGCAGATTAACTCGTGCTGGTTCTGTTATTCTTGCACTTCATGATGCGAGCGATGTGTTCCTTGAAATTGGGAAAATGTCTAAATATTGCGGAGCGGAAAGTCTCGCGAGCATTTCGTTTGTTCTTTTCGCGCTGTCTTGGGTCGTTCTACGTCTCATTTACTATCCTTTTTGGATCCTGTGGAGCACGAGCTATCAAATCATTATGACTGTGGACAAAGAAAAGCATCCTAATGGACCAATCTTGTACTATATGTTCAACACACTTTTGTATTTCTTGCTTGTTCTTCACATATTCTGGTGGGTTTTGATTTACCGGATGCTTGTGAAACAAGTGCAAGATCGAGGCAAGCTTAGCGAAGATGTTAGATCCGATTCTGAAAGCGATGATGAACACGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

310

Amino Acids

36.5

Weight (kDa)

7.01

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	77 - 282	4.2e-51	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	623
AccII	CGCG	3 cut(s)	437, 635, 659
AciI	CCGC	2 cut(s)	618, 623
AclWI	GGATC	3 cut(s)	697, 710, 891
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	3 cut(s)	175, 425, 776
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	318, 388, 593, 787
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	5 cut(s)	245, 272, 277, 720, 880
AluI	AGCT	5 cut(s)	245, 272, 277, 720, 880
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	3 cut(s)	11, 635, 686
AlwI	GGATC	3 cut(s)	697, 710, 891
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	2 cut(s)	341, 764
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	2 cut(s)	12, 226
AvaII	GGWCC	2 cut(s)	341, 764
BamHI	GGATCC	1 cut(s)	702
BarI	GAAGNNNNNNTAC	4 cut(s)	157, 189, 242, 274
BauI	CACGAG	3 cut(s)	540, 715, 923
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	11, 635, 686
BfmI	CTRYAG	1 cut(s)	529
BisI	GCNGC	1 cut(s)	408
BlpI	GCTNAGC	2 cut(s)	273, 881
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	341, 764
BmgT120I	GGNCC	2 cut(s)	341, 764
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	562, 763, 837
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	2 cut(s)	273, 881
Bpu14I	TTCGAA	2 cut(s)	12, 226
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	308, 480
BsaWI	WCCGGW	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	308, 480
BseGI	GGATG	3 cut(s)	174, 754, 852
BseMII	CTCAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	3 cut(s)	437, 635, 659
BshFI	GGCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	1 cut(s)	844
BsmAI	GTCTC	3 cut(s)	11, 635, 686
BsmBI	CGTCTC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	1 cut(s)	11
Bsp119I	TTCGAA	2 cut(s)	12, 226
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
Bsp1720I	GCTNAGC	2 cut(s)	273, 881
Bsp19I	CCATGG	1 cut(s)	480
Bsp68I	TCGCGA	1 cut(s)	635
BspACI	CCGC	2 cut(s)	618, 623
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	3 cut(s)	437, 635, 659
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	704
BspMAI	CTGCAG	1 cut(s)	533
BspPI	GGATC	3 cut(s)	697, 710, 891
BspT104I	TTCGAA	2 cut(s)	12, 226
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	308, 480
BssMI	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
BssSI	CACGAG	3 cut(s)	540, 715, 923
BssT1I	CCWWGG	2 cut(s)	308, 480
Bst2BI	CACGAG	3 cut(s)	540, 715, 923
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	462, 739
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	423
BstBI	TTCGAA	2 cut(s)	12, 226
BstC8I	GCNNGC	3 cut(s)	577, 637, 878
BstDEI	CTNAG	2 cut(s)	273, 881
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	174, 754, 852
BstFNI	CGCG	3 cut(s)	437, 635, 659
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	6 cut(s)	159, 352, 367, 705, 871, 899
BstMAI	GTCTC	3 cut(s)	11, 635, 686
BstMBI	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
BstMWI	GCNNNNNNNGC	1 cut(s)	882
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	3 cut(s)	437, 635, 659
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	2 cut(s)	702, 896
BstYI	RGATCY	2 cut(s)	702, 896
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	2 cut(s)	594, 927
BtsCI	GGATG	3 cut(s)	174, 754, 852
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
BtuMI	TCGCGA	1 cut(s)	635
Cac8I	GCNNGC	3 cut(s)	577, 637, 878
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	341, 764
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	174, 424, 775
CviAII	CATG	2 cut(s)	481, 569
CviJI	RGCY	6 cut(s)	245, 272, 277, 361, 720, 880
CviKI_1	RGCY	6 cut(s)	245, 272, 277, 361, 720, 880
CviQI	GTAC	3 cut(s)	174, 424, 775
DdeI	CTNAG	2 cut(s)	273, 881
DpnI	GATC	6 cut(s)	158, 351, 366, 704, 870, 898
DpnII	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
DraI	TTTAAA	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	308, 480
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	341, 764
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	308, 480
ErhI	CCWWGG	2 cut(s)	308, 480
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	2 cut(s)	484, 572
FatI	CATG	2 cut(s)	480, 568
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	3 cut(s)	181, 741, 859
Fsp4HI	GCNGC	1 cut(s)	408
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	844
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	2 cut(s)	484, 572
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	6 cut(s)	14, 44, 126, 239, 414, 902
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	5 cut(s)	354, 466, 473, 901, 907
Hpy188III	TCNNGA	4 cut(s)	62, 136, 569, 634
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	2 cut(s)	462, 739
HpyCH4IV	ACGT	2 cut(s)	422, 679
HpyCH4V	TGCA	4 cut(s)	89, 531, 563, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	882
HpyF3I	CTNAG	2 cut(s)	273, 881
HpySE526I	ACGT	2 cut(s)	422, 679
Hsp92II	CATG	2 cut(s)	484, 572
HspAI	GCGC	1 cut(s)	659
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
LmnI	GCTCC	2 cut(s)	620, 711
LpnPI	CCDG	9 cut(s)	187, 330, 357, 375, 396, 531, 719, 811, 857
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	3 cut(s)	562, 763, 837
MaeII	ACGT	2 cut(s)	422, 679
MaeIII	GTNAC	2 cut(s)	185, 292
MalI	GATC	6 cut(s)	158, 351, 366, 704, 870, 898
MbiI	CCGCTC	1 cut(s)	623
MboI	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
MboII	GAAGA	6 cut(s)	88, 124, 217, 388, 806, 899
MflI	RGATCY	2 cut(s)	702, 896
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	4 cut(s)	105, 140, 230, 594
MnlI	CCTC	4 cut(s)	90, 527, 866, 919
MseI	TTAA	3 cut(s)	234, 536, 931
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	3 cut(s)	437, 635, 659
MwoI	GCNNNNNNNGC	1 cut(s)	882
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
NlaIII	CATG	2 cut(s)	484, 572
NlaIV	GGNNCC	1 cut(s)	704
NmuCI	GTSAC	2 cut(s)	185, 292
NruI	TCGCGA	1 cut(s)	635
NspV	TTCGAA	2 cut(s)	12, 226
PagI	TCATGA	1 cut(s)	568
PfeI	GAWTC	6 cut(s)	14, 44, 126, 239, 414, 902
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	2 cut(s)	341, 764
PsrI	GAACNNNNNNTAC	2 cut(s)	767, 799
PstI	CTGCAG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	702, 896
PvuII	CAGCTG	1 cut(s)	272
RruI	TCGCGA	1 cut(s)	635
RsaI	GTAC	3 cut(s)	175, 425, 776
RsaNI	GTAC	3 cut(s)	174, 424, 775
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	234, 536, 931
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	6 cut(s)	156, 349, 364, 702, 868, 896
Sau96I	GGNCC	2 cut(s)	341, 764
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	716
SetI	ASST	8 cut(s)	247, 274, 279, 310, 425, 682, 722, 882
SfaNI	GCATC	3 cut(s)	562, 763, 837
SfcI	CTRYAG	1 cut(s)	529
SfuI	TTCGAA	2 cut(s)	12, 226
SinI	GGWCC	2 cut(s)	341, 764
SmiMI	CAYNNNNRTG	1 cut(s)	759
Sse9I	AATT	4 cut(s)	105, 140, 230, 594
SsiI	CCGC	2 cut(s)	618, 623
SspI	AATATT	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	308, 480
TaaI	ACNGT	2 cut(s)	462, 739
TaiI	ACGT	2 cut(s)	425, 682
TaqI	TCGA	6 cut(s)	12, 30, 109, 135, 226, 871
TasI	AATT	4 cut(s)	105, 140, 230, 594
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	6 cut(s)	14, 44, 126, 239, 414, 902
Tru1I	TTAA	3 cut(s)	234, 536, 931
Tru9I	TTAA	3 cut(s)	234, 536, 931
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	185, 292
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	185, 292
TspDTI	ATGAA	5 cut(s)	318, 389, 395, 557, 933
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	341, 764
XapI	RAATTY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.