Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

58796257 .. 58796568

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0462100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAAACCGAATTGCTAAAAGCTTCTTTGAATTCCTTATGGCAGCCATTGGGCCCATGGAGACTAGTTCTCATTGGCAAGGGATACTATGATCTCCATTTTAATTCGGAAGCTGACCTGCGCAAGGTTTGGGGTGGTGGCACCTGCACTCTTGAGTCTGGAATCTTTCGGTTGTCGCAATGGCAGCCGGACTTTAAGCCTGGGGATGTTCTTCCTCAAACCCATGCTCAAATATGGATAAGAATATCTGGTCTTAGTCAAGAGTACTGGCATCAGCAACACATCATGGAAATTGCACGTGGTACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

103

Amino Acids

11.89

Weight (kDa)

6.9

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	6 - 67	1.7e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc16I	TGCGCA	1 cut(s)	122
Acc36I	ACCTGC	2 cut(s)	126, 152
AccB1I	GGYRCC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	31
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	266, 304
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	31
AhlI	ACTAGT	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	23, 113
AluI	AGCT	2 cut(s)	23, 113
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	52
ApaI	GGGCCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	43, 184
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	52, 53
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	55, 196
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	2 cut(s)	126, 152
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	44, 185
BlsI	GCNGC	2 cut(s)	45, 186
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	52, 53
BmiI	GGNNCC	2 cut(s)	54, 142
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	56, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	56, 200
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	55, 196
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	54
Bsp120I	GGGCCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	56
BspANI	GGCC	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	54, 142
BspMI	ACCTGC	2 cut(s)	126, 152
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	56, 200
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	55, 196
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	211
BveI	ACCTGC	2 cut(s)	126, 152
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	52, 53
Csp6I	GTAC	2 cut(s)	265, 303
CviAII	CATG	3 cut(s)	57, 224, 286
CviJI	RGCY	6 cut(s)	23, 46, 54, 113, 187, 199
CviKI_1	RGCY	6 cut(s)	23, 46, 54, 113, 187, 199
CviQI	GTAC	2 cut(s)	265, 303
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	56
Eco72I	CACGTG	1 cut(s)	299
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	60, 227, 289
FaiI	YATR	6 cut(s)	40, 58, 90, 225, 235, 287
FatI	CATG	3 cut(s)	56, 223, 285
Fnu4HI	GCNGC	2 cut(s)	44, 185
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	44, 185
FspBI	CTAG	1 cut(s)	65
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	44, 185
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	60, 227, 289
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	2 cut(s)	155, 162
HpaII	CCGG	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	152, 159, 260
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	147, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	60, 227, 289
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	131, 144, 157, 186, 201, 213, 234, 253
Lsp1109I	GCAGC	2 cut(s)	55, 196
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	298
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	4 cut(s)	11, 31, 103, 291
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	102, 195
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	60, 227, 289
NlaIV	GGNNCC	2 cut(s)	54, 142
NsbI	TGCGCA	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	45, 186
PleI	GAGTC	1 cut(s)	163
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	54, 142
PspOMI	GGGCCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	52, 53
RsaI	GTAC	2 cut(s)	266, 304
RsaNI	GTAC	2 cut(s)	265, 303
SaqAI	TTAA	2 cut(s)	102, 195
SatI	GCNGC	2 cut(s)	44, 185
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	52, 53
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	6 cut(s)	25, 115, 120, 129, 146, 301
SfaNI	GCATC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	4 cut(s)	11, 31, 103, 291
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	56
TaiI	ACGT	1 cut(s)	301
TasI	AATT	4 cut(s)	11, 31, 103, 291
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	102, 195
Tru9I	TTAA	2 cut(s)	102, 195
TseI	GCWGC	2 cut(s)	43, 184
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.