Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

7370440 .. 7373667

Gene Structure 3228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13070.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTCTCAGCGATTGGGGCAAGTACTTGGAGGAGGAGTCTTACCCAGTTCCCAGAGACTTCTTGGTTCTTCCCTTGTTTGTTCTCCTCTTCCCTTCTCTTAGGCTCGTCCTTGACGTTTTCGTATTTGAGAGATTAGCGAGATGTCTTATGTCTGGAAAGGAACAGAAGAAAGTCGAGACACATGAAGAGCAGAGAAAAGTTAATAAATTTAAAGAGTCGGCATGGAAGTGCCTATACTTTTTTTCTGCTGAGGCTTTGGCCCTTTCCATAACATACAATGAGCCTTGGTTCTCAAACACAAAACACTTTTGGGTCGGGCCTGGCGATCAGGTTTGGCCTGAGCAGAAAACTAAATTAAAATTGAAGGCACTCTACATGTTTTCTGCTGGGTTTTACATGTACTCCAGCTTTGCTTTGGTGTTTTGGGAAACAAGGCGTTCTGACTTTTGGGCATCTATGGCTCATCATATAGCAACAACAATATTGATTGTGTTTTCTTACATGGCGAGGTTTTGCCGAGTTGGCTCAATCATTTTAGCCCTTCATGAAGGATGTGATGTGTTTTTAGAAATAGCAAAAATGTCAAAATATTGTGGCTTTGAACTAATTGCCAGCGTCTCCTTTGTTATGTTTGTTCTATCTTGGACAATTCTACGTCTTATCTACTTCCCCTTCTGGATAATTTGGAGTACCAGCTATGAATCCCTTTTGAACTTGGACAAGGAAAAGCACATGGTGGATGGATCTATATACTATTACTTGTTTAATACTCTTCTAATTTGCTTGCTCATTCTTCATATCTATTGGTGGAAGTTGATGGCCTGGATGCTCATAAAGCAAATCCGCTCATGGGGGAAACTTGATGATGATGTTCGATCTGATTCTGAAGATGATGATGATGAGCATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

306

Amino Acids

36.22

Weight (kDa)

5.8

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	70 - 274	5.3e-49	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	849
AciI	CCGC	1 cut(s)	847
AclWI	GGATC	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	909
AdeI	CACNNNGTG	1 cut(s)	739
AfaI	GTAC	3 cut(s)	26, 404, 694
AfiI	CCNNNNNNNGG	1 cut(s)	853
AflIII	ACRYGT	2 cut(s)	378, 399
AgsI	TTSAA	3 cut(s)	367, 605, 715
AjnI	CCWGG	2 cut(s)	322, 824
AluBI	AGCT	2 cut(s)	411, 699
AluI	AGCT	2 cut(s)	411, 699
Alw26I	GTCTC	4 cut(s)	11, 51, 173, 625
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	4 cut(s)	261, 320, 338, 822
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	262, 320
BarI	GAAGNNNNNNTAC	4 cut(s)	221, 253, 359, 391
BbvCI	CCTCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	737, 814
BciT130I	CCWGG	2 cut(s)	324, 826
BcoDI	GTCTC	4 cut(s)	11, 51, 173, 625
BglI	GCCNNNNNGGC	1 cut(s)	525
BmcAI	AGTACT	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	324, 826
BmgT120I	GGNCC	2 cut(s)	262, 320
BmrFI	CCNGG	2 cut(s)	324, 826
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	464, 819
BmuI	ACTGGG	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	391
Bpu10I	CCTNAGC	2 cut(s)	252, 342
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 389, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	324, 826
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	3 cut(s)	560, 748, 834
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseMII	CTCAG	3 cut(s)	22, 243, 333
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	3 cut(s)	47, 50, 77
BseYI	CCCAGC	1 cut(s)	389
BshFI	GGCC	4 cut(s)	263, 322, 340, 824
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmAI	GTCTC	4 cut(s)	11, 51, 173, 625
BsmBI	CGTCTC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	263, 322, 340, 824
Bso31I	GGTCTC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	328, 746, 878
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	4 cut(s)	263, 322, 340, 824
BspCNI	CTCAG	3 cut(s)	21, 244, 334
BspHI	TCATGA	1 cut(s)	547
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	849
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	328, 746, 878
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	324, 826
Bst6I	CTCTTC	3 cut(s)	95, 183, 780
BstC8I	GCNNGC	2 cut(s)	616, 788
BstDEI	CTNAG	4 cut(s)	8, 101, 252, 342
BstF5I	GGATG	3 cut(s)	560, 748, 834
BstKTI	GATC	3 cut(s)	331, 749, 881
BstMAI	GTCTC	4 cut(s)	11, 51, 173, 625
BstMBI	GATC	3 cut(s)	328, 746, 878
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 461, 525, 838
BstNI	CCWGG	2 cut(s)	324, 826
BstNSI	RCATGY	2 cut(s)	382, 403
BstSCI	CCNGG	2 cut(s)	322, 824
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BsuRI	GGCC	4 cut(s)	263, 322, 340, 824
BtsCI	GGATG	3 cut(s)	560, 748, 834
Cac8I	GCNNGC	2 cut(s)	616, 788
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	262, 320
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	25, 403, 693
CviAII	CATG	9 cut(s)	185, 225, 379, 400, 505, 548, 736, 852, 908
CviQI	GTAC	3 cut(s)	25, 403, 693
DdeI	CTNAG	4 cut(s)	8, 101, 252, 342
DpnI	GATC	3 cut(s)	330, 748, 880
DpnII	GATC	3 cut(s)	328, 746, 878
DraI	TTTAAA	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	95, 183, 780
EarI	CTCTTC	3 cut(s)	95, 183, 780
Eco130I	CCWWGG	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	909
EcoRII	CCWGG	2 cut(s)	322, 824
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	9 cut(s)	188, 228, 382, 403, 508, 551, 739, 855, 911
FatI	CATG	9 cut(s)	184, 224, 378, 399, 504, 547, 735, 851, 907
FokI	GGATG	3 cut(s)	567, 755, 841
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	391
HaeIII	GGCC	4 cut(s)	263, 322, 340, 824
HgaI	GACGC	1 cut(s)	607
Hin1II	CATG	9 cut(s)	188, 228, 382, 403, 508, 551, 739, 855, 911
HinfI	GANTC	4 cut(s)	38, 218, 704, 884
Hpy188I	TCNGA	3 cut(s)	445, 883, 889
Hpy188III	TCNNGA	4 cut(s)	156, 178, 548, 679
HpyAV	CCTTC	5 cut(s)	105, 361, 545, 554, 685
HpyCH4IV	ACGT	2 cut(s)	117, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 461, 525, 838
HpyF3I	CTNAG	4 cut(s)	8, 101, 252, 342
HpySE526I	ACGT	2 cut(s)	117, 658
Hsp92II	CATG	9 cut(s)	188, 228, 382, 403, 508, 551, 739, 855, 911
Kzo9I	GATC	3 cut(s)	328, 746, 878
LguI	GCTCTTC	1 cut(s)	183
LweI	GCATC	2 cut(s)	464, 819
MaeII	ACGT	2 cut(s)	117, 658
MalI	GATC	3 cut(s)	330, 748, 880
MbiI	CCGCTC	1 cut(s)	849
MboI	GATC	3 cut(s)	328, 746, 878
MboII	GAAGA	7 cut(s)	62, 82, 181, 200, 767, 788, 902
MflI	RGATCY	1 cut(s)	746
MluCI	AATT	7 cut(s)	209, 356, 362, 609, 651, 684, 780
MlyI	GAGTC	2 cut(s)	47, 227
MnlI	CCTC	5 cut(s)	25, 28, 98, 247, 504
MseI	TTAA	4 cut(s)	204, 213, 359, 768
MslI	CAYNNNNRTG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	324, 826
MvaI	CCWGG	2 cut(s)	324, 826
MwoI	GCNNNNNNNGC	4 cut(s)	18, 461, 525, 838
NdeII	GATC	3 cut(s)	328, 746, 878
NlaIII	CATG	9 cut(s)	188, 228, 382, 403, 508, 551, 739, 855, 911
NmeAIII	GCCGAG	1 cut(s)	545
NspI	RCATGY	2 cut(s)	382, 403
PagI	TCATGA	1 cut(s)	547
PciI	ACATGT	2 cut(s)	378, 399
PciSI	GCTCTTC	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 324
PfeI	GAWTC	2 cut(s)	704, 884
PleI	GAGTC	2 cut(s)	46, 226
PpsI	GAGTC	2 cut(s)	46, 226
PscI	ACATGT	2 cut(s)	378, 399
Psp6I	CCWGG	2 cut(s)	322, 824
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	322, 824
PspPI	GGNCC	2 cut(s)	262, 320
PsuI	RGATCY	1 cut(s)	746
RsaI	GTAC	3 cut(s)	26, 404, 694
RsaNI	GTAC	3 cut(s)	25, 403, 693
RseI	CAYNNNNRTG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	204, 213, 359, 768
Sau3AI	GATC	3 cut(s)	328, 746, 878
Sau96I	GGNCC	2 cut(s)	262, 320
ScaI	AGTACT	1 cut(s)	26
SchI	GAGTC	2 cut(s)	47, 227
ScrFI	CCNGG	2 cut(s)	324, 826
SetI	ASST	6 cut(s)	120, 336, 413, 515, 661, 701
SfaNI	GCATC	2 cut(s)	464, 819
SmiMI	CAYNNNNRTG	1 cut(s)	229
Sse9I	AATT	7 cut(s)	209, 356, 362, 609, 651, 684, 780
SsiI	CCGC	1 cut(s)	847
SspI	AATATT	2 cut(s)	486, 593
StyD4I	CCNGG	2 cut(s)	322, 824
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	2 cut(s)	120, 661
TaqI	TCGA	2 cut(s)	177, 877
TasI	AATT	7 cut(s)	209, 356, 362, 609, 651, 684, 780
TatI	WGTACW	2 cut(s)	24, 402
TfiI	GAWTC	2 cut(s)	704, 884
Tru1I	TTAA	4 cut(s)	204, 213, 359, 768
Tru9I	TTAA	4 cut(s)	204, 213, 359, 768
TspDTI	ATGAA	5 cut(s)	201, 536, 564, 717, 788
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	2 cut(s)	382, 403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 415
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.