Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

41853112 .. 41861885

Gene Structure 8774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAAGAGGACACTGATGAAGAAACACTTGAGGAGGAGGAAGCTAAATGCTTAGCGGCATTAATTGTATCTCGTCCTGAGATGCTTGCCAAGCTGTATGAGGAGATGAATGTTTTCAGTACTTTCACTGAGCTCTTGCGGCAAACTGGAAATGTCACAAAGCGCCAGTTTGACATCAATGAACAGAGGAATACAGACGCTGCGGCTTTCCTGTTGAGATGGAGCTTAGCAGTTGATAAGTGTAATGCTACCCATAGCCAGTGCAAGGTGCTAAAGGATTCAGATATGAATACAATGTGGAAATGGCTCCTTGTTGAAGTACCTATGCTACTAGAGTGCAAAAGCCCGAAAAATTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

120

Amino Acids

13.98

Weight (kDa)

4.67

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 139, 203
AfaI	GTAC	2 cut(s)	121, 321
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	4 cut(s)	44, 94, 133, 225
AluI	AGCT	4 cut(s)	44, 94, 133, 225
Alw21I	GWGCWC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	4 cut(s)	57, 140, 201, 204
BlpI	GCTNAGC	2 cut(s)	52, 226
BlsI	GCNGC	4 cut(s)	58, 141, 202, 205
BmcAI	AGTACT	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	72
Bpu1102I	GCTNAGC	2 cut(s)	52, 226
BpuEI	CTTGAG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	3 cut(s)	151, 166, 259
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	69, 120
BseNI	ACTGG	3 cut(s)	151, 166, 259
BseRI	GAGGAG	3 cut(s)	47, 50, 116
BseXI	GCAGC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1720I	GCTNAGC	2 cut(s)	52, 226
BspACI	CCGC	3 cut(s)	56, 139, 203
BspCNI	CTCAG	2 cut(s)	70, 121
BspLI	GGNNCC	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	151, 166, 259
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	4 cut(s)	52, 78, 129, 226
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 139
BstV1I	GCAGC	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	12, 126, 266
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	165
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	120, 320
CviJI	RGCY	8 cut(s)	44, 94, 133, 206, 225, 258, 307, 345
CviKI_1	RGCY	8 cut(s)	44, 94, 133, 206, 225, 258, 307, 345
CviQI	GTAC	2 cut(s)	120, 320
DdeI	CTNAG	4 cut(s)	52, 78, 129, 226
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	135
FaiI	YATR	4 cut(s)	99, 255, 287, 326
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
Fnu4HI	GCNGC	4 cut(s)	57, 140, 201, 204
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	57, 140, 201, 204
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	4 cut(s)	57, 140, 201, 204
HaeII	RGCGCY	1 cut(s)	166
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	264, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 139
HpyF3I	CTNAG	4 cut(s)	52, 78, 129, 226
HspAI	GCGC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	222, 312
LpnPI	CCDG	5 cut(s)	90, 132, 179, 224, 272
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	17, 32
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	63, 352
MnlI	CCTC	5 cut(s)	25, 28, 31, 94, 180
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	91, 139
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	58, 141, 202, 205
PshBI	ATTAAT	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	121, 321
RsaNI	GTAC	2 cut(s)	120, 320
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	4 cut(s)	57, 140, 201, 204
ScaI	AGTACT	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	46, 96, 135, 227, 270, 325
SfaNI	GCATC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	63, 352
SsiI	CCGC	3 cut(s)	56, 139, 203
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	135
TasI	AATT	2 cut(s)	63, 352
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	3 cut(s)	59, 142, 206
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	3 cut(s)	19, 133, 266
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	33, 122, 195, 302
TspRI	CASTG	3 cut(s)	19, 133, 266
VspI	ATTAAT	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.