Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

34182024 .. 34184706

Gene Structure 2683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1207300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGGAAATGATGGGTCTGTCTGGAATCAGTGATTTGGTCAAACTCAACTGGGAGGAGGAGTCGTACCCAGTGCCCAATGACTTCTTTGTCCTCCCCTTGTTCGTTCTTCTCTTCCCGTCACTCAGGCTCTTCCTGGACGTTTTCGTCTTTGAGAGATTAGCAAAGCGCCTTTTGTTTGGAAAGAAGTATGCATCGCTGAATGTTGAGACATGTGATAATCGGAAAGTTAATAAATTCAAAGAGTCGGCATTCAAATGTGTTTATTTTTTCACTGCGGAGCTTTTGGCTCTATATGTTACGTACGATGAGCCTTGGTTCTCTAAAACCAGATATTTCTGGGTAGGGCCTGGCAATCAGATTTGGCCCGACCAGAAAACCAAATTAAAATTGAAGGCGCTTTACATGTATTCCGCTGGATTCTACATCTACTCCACCTTTGCTTTGGTGTTTTGGGAAACAAGGCGTTCTGACTTTGTAGTGTCAATGTCTCATCATTTAGCAACTACGATTTTAATTGTGGCATCTTACATATTCAAGTTTTCTCGAGTAGGCTCGGTCATTTTAGCTCTCCATGAAGGATCTGATGTGTTTTTAGAAATTGCAAAGTTGTCAAAATATTGTGGCTTTGAAATGCTTGCCGGCATTGCTTTTGTTAGTTTTGTTCTCTCTTGGACGGTACTACGTCTTATTTACTTTCCATTCTGGATAATATGGAGTACCAGCTATGAAGCTCTTCTGACCTTGGACAGGGAGAAGCACATAGTGGATGGATCTATATACTATTACTTGTTTAATACTCTTTTAATTGGCTTGCTCTTTTGTCATATTTATTGGTGGAAGTTGATGGTTCGGATGCTCGTGAAGCAAATTCAGGCTAGAGGGAAAGTTGATGACGATGTTCGATCTGATTCTGAAGGTGAGGATGATGAACACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

315

Amino Acids

36.92

Weight (kDa)

5.93

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	79 - 285	2.9e-46	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	89, 146
AciI	CCGC	2 cut(s)	278, 414
AclWI	GGATC	2 cut(s)	589, 781
AcsI	RAATTY	2 cut(s)	236, 870
AcuI	CTGAAG	1 cut(s)	936
AdeI	CACNNNGTG	1 cut(s)	766
AfaI	GTAC	4 cut(s)	68, 305, 681, 721
AfiI	CCNNNNNNNGG	1 cut(s)	750
AflIII	ACRYGT	2 cut(s)	212, 405
AgsI	TTSAA	5 cut(s)	241, 256, 394, 538, 632
AjnI	CCWGG	2 cut(s)	135, 349
AluBI	AGCT	4 cut(s)	283, 569, 726, 734
AluI	AGCT	4 cut(s)	283, 569, 726, 734
Alw26I	GTCTC	2 cut(s)	203, 495
AlwI	GGATC	2 cut(s)	589, 781
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	347, 365
ApoI	RAATTY	2 cut(s)	236, 870
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	171, 400
AspS9I	GGNCC	2 cut(s)	347, 366
AsuHPI	GGTGA	1 cut(s)	932
AvaI	CYCGRG	1 cut(s)	546
BaeGI	GKGCMC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BauI	CACGAG	2 cut(s)	860, 935
BccI	CCATC	3 cut(s)	7, 764, 841
BciT130I	CCWGG	2 cut(s)	137, 351
BcoDI	GTCTC	2 cut(s)	203, 495
BfaI	CTAG	1 cut(s)	879
BfoI	RGCGCY	2 cut(s)	172, 401
Bme1390I	CCNGG	2 cut(s)	137, 351
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	347, 366
BmrFI	CCNGG	2 cut(s)	137, 351
BmrI	ACTGGG	2 cut(s)	61, 65
BmsI	GCATC	3 cut(s)	203, 533, 846
BmuI	ACTGGG	2 cut(s)	61, 65
BsaAI	YACGTR	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	314, 744
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 50, 77, 80, 416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	56, 71
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	137, 351
BseDI	CCNNGG	2 cut(s)	314, 744
BseGI	GGATG	3 cut(s)	775, 861, 931
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	56, 71
BseRI	GAGGAG	2 cut(s)	71, 74
BseSI	GKGCMC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	349, 367
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	642
BsiWI	CGTACG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmAI	GTCTC	2 cut(s)	203, 495
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	349, 367
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	581, 773, 905
BspACI	CCGC	2 cut(s)	278, 414
BspANI	GGCC	2 cut(s)	349, 367
BspCNI	CTCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	589, 781
BspQI	GCTCTTC	2 cut(s)	137, 741
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	56, 71
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	314, 744
BssMI	GATC	3 cut(s)	581, 773, 905
BssSI	CACGAG	2 cut(s)	860, 935
BssT1I	CCWWGG	2 cut(s)	314, 744
Bst2BI	CACGAG	2 cut(s)	860, 935
Bst2UI	CCWGG	2 cut(s)	137, 351
Bst4CI	ACNGT	1 cut(s)	679
Bst6I	CTCTTC	3 cut(s)	119, 137, 741
BstBAI	YACGTR	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	639, 643, 815
BstDEI	CTNAG	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	748
BstF5I	GGATG	3 cut(s)	775, 861, 931
BstH2I	RGCGCY	2 cut(s)	172, 401
BstHHI	GCGC	2 cut(s)	171, 400
BstKTI	GATC	3 cut(s)	584, 776, 908
BstMAI	GTCTC	2 cut(s)	203, 495
BstMBI	GATC	3 cut(s)	581, 773, 905
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 865
BstNI	CCWGG	2 cut(s)	137, 351
BstNSI	RCATGY	2 cut(s)	216, 409
BstSCI	CCNGG	2 cut(s)	135, 349
BstSLI	GKGCMC	1 cut(s)	78
BstSNI	TACGTA	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	581, 773
BstYI	RGATCY	2 cut(s)	581, 773
BsuRI	GGCC	2 cut(s)	349, 367
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	775, 861, 931
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	37, 78, 273
Cac8I	GCNNGC	3 cut(s)	639, 643, 815
CfoI	GCGC	2 cut(s)	171, 400
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	347, 366
Csp6I	GTAC	4 cut(s)	67, 304, 680, 720
CviAII	CATG	3 cut(s)	213, 406, 575
CviQI	GTAC	4 cut(s)	67, 304, 680, 720
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	583, 775, 907
DpnII	GATC	3 cut(s)	581, 773, 905
DraIII	CACNNNGTG	1 cut(s)	766
DrdI	GACNNNNNNGTC	2 cut(s)	89, 146
DseDI	GACNNNNNNGTC	2 cut(s)	89, 146
Eam1104I	CTCTTC	3 cut(s)	119, 137, 741
EarI	CTCTTC	3 cut(s)	119, 137, 741
Eco105I	TACGTA	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	314, 744
Eco57I	CTGAAG	1 cut(s)	936
Eco88I	CYCGRG	1 cut(s)	546
EcoNI	CCTNNNNNAGG	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	135, 349
EcoT14I	CCWWGG	2 cut(s)	314, 744
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	314, 744
FaeI	CATG	3 cut(s)	216, 409, 578
FatI	CATG	3 cut(s)	212, 405, 574
FokI	GGATG	3 cut(s)	782, 868, 938
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	2 cut(s)	170, 399
HaeII	RGCGCY	2 cut(s)	172, 401
HaeIII	GGCC	2 cut(s)	349, 367
HapII	CCGG	1 cut(s)	642
HhaI	GCGC	2 cut(s)	171, 400
Hin1II	CATG	3 cut(s)	216, 409, 578
Hin6I	GCGC	2 cut(s)	169, 398
HinP1I	GCGC	2 cut(s)	169, 398
HinfI	GANTC	5 cut(s)	27, 62, 245, 420, 911
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	1 cut(s)	932
Hpy188I	TCNGA	8 cut(s)	225, 360, 472, 586, 741, 855, 910, 916
Hpy188III	TCNNGA	4 cut(s)	24, 546, 706, 862
HpyAV	CCTTC	3 cut(s)	388, 572, 911
HpyCH4III	ACNGT	1 cut(s)	679
HpyCH4IV	ACGT	3 cut(s)	141, 302, 685
HpyCH4V	TGCA	2 cut(s)	194, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 865
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	3 cut(s)	141, 302, 685
Hsp92II	CATG	3 cut(s)	216, 409, 578
HspAI	GCGC	2 cut(s)	169, 398
KroI	GCCGGC	1 cut(s)	641
KroNI	GCCGGC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	581, 773, 905
LguI	GCTCTTC	2 cut(s)	137, 741
LmnI	GCTCC	1 cut(s)	280
LweI	GCATC	3 cut(s)	203, 533, 846
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	3 cut(s)	141, 302, 685
MaeIII	GTNAC	2 cut(s)	120, 298
MalI	GATC	3 cut(s)	583, 775, 907
MboI	GATC	3 cut(s)	581, 773, 905
MboII	GAAGA	4 cut(s)	101, 106, 124, 728
MflI	RGATCY	2 cut(s)	581, 773
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	7 cut(s)	236, 383, 389, 516, 600, 807, 870
MlyI	GAGTC	2 cut(s)	71, 254
MnlI	CCTC	6 cut(s)	49, 52, 104, 875, 916, 931
Mph1103I	ATGCAT	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	5 cut(s)	231, 386, 515, 795, 806
MslI	CAYNNNNRTG	1 cut(s)	256
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	2 cut(s)	137, 351
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	2 cut(s)	137, 351
MwoI	GCNNNNNNNGC	2 cut(s)	647, 865
NaeI	GCCGGC	1 cut(s)	643
NdeII	GATC	3 cut(s)	581, 773, 905
NgoMIV	GCCGGC	1 cut(s)	641
NlaIII	CATG	3 cut(s)	216, 409, 578
NmuCI	GTSAC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	2 cut(s)	216, 409
PaeR7I	CTCGAG	1 cut(s)	546
PciI	ACATGT	2 cut(s)	212, 405
PciSI	GCTCTTC	2 cut(s)	137, 741
PctI	GAATGC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	27, 420, 911
Pfl23II	CGTACG	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	135
PleI	GAGTC	2 cut(s)	70, 253
PpsI	GAGTC	2 cut(s)	70, 253
Ppu21I	YACGTR	1 cut(s)	303
PscI	ACATGT	2 cut(s)	212, 405
Psp6I	CCWGG	2 cut(s)	135, 349
PspGI	CCWGG	2 cut(s)	135, 349
PspLI	CGTACG	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	347, 366
PsuI	RGATCY	2 cut(s)	581, 773
RsaI	GTAC	4 cut(s)	68, 305, 681, 721
RsaNI	GTAC	4 cut(s)	67, 304, 680, 720
RseI	CAYNNNNRTG	1 cut(s)	256
SapI	GCTCTTC	2 cut(s)	137, 741
SaqAI	TTAA	5 cut(s)	231, 386, 515, 795, 806
Sau3AI	GATC	3 cut(s)	581, 773, 905
Sau96I	GGNCC	2 cut(s)	347, 366
SchI	GAGTC	2 cut(s)	71, 254
ScrFI	CCNGG	2 cut(s)	137, 351
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	3 cut(s)	203, 533, 846
Sfr274I	CTCGAG	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	303
Sse9I	AATT	7 cut(s)	236, 383, 389, 516, 600, 807, 870
SsiI	CCGC	2 cut(s)	278, 414
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	2 cut(s)	135, 349
StyI	CCWWGG	2 cut(s)	314, 744
TaaI	ACNGT	1 cut(s)	679
TaiI	ACGT	3 cut(s)	144, 305, 688
TaqI	TCGA	2 cut(s)	547, 904
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	7 cut(s)	236, 383, 389, 516, 600, 807, 870
TfiI	GAWTC	3 cut(s)	27, 420, 911
Tru1I	TTAA	5 cut(s)	231, 386, 515, 795, 806
Tru9I	TTAA	5 cut(s)	231, 386, 515, 795, 806
TscAI	CASTG	3 cut(s)	37, 78, 280
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	591, 744, 945
TspRI	CASTG	3 cut(s)	37, 78, 280
XagI	CCTNNNNNAGG	1 cut(s)	748
XapI	RAATTY	2 cut(s)	236, 870
XceI	RCATGY	2 cut(s)	216, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.