Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

2919560 .. 2922272

Gene Structure 2713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTTTGGCGGAGTACTTGAGGACAATCGATTGGGAGGAGGAAGCCTACCCAGCATATGAAGATTTCGCAATTCTTCCTTTGTTCGTCCTCTGCTTCCCAACCGTCCGATTTTTTCTGGATAGATTCGTCTTTGAGAAATTGGGGAGGCGGTTAATTTTTGGAAAGGGCATTCAGAAGTGGGATGTAAAAACTGATGAACAAAGGAAGAAGATTAGAAAATTCAAGGAGTCAGCATGGAAATGCATATATTTTCTTTCAGCAGAGTTTCTAGCCCTCTCTGTAACTTACGAAGAGCCTTGGTTTACTAATACAAAATACTTTTGGGTAGGACCAGGAGACCAGGTCTGGCCAGACCAAAAAATGAAGTTGAAATTGAAGGGGGTTTATATGTATGCTGCTGGATTTTACACATACTCCATATTTGCTTTGATTTTCTGGGAAACAAGGCGTTCCGACTTTGGGGTGTCCATGGGCCATCATGTAGCAACTGTCATTCTCATTGTGCTGTCTTACATTTTCAGGTTTGCCCGCGTAGGTTCAGTTGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTCTTGAGGTAGGGAAGATGTCCAAATACAGTGGTGCGGAAATGACTGCTAGCTTTGCATTTATTCTTTTTGTATTGTCTTGGATCATACTGCGACTCATTTACTATCCATTCTGGGTCCTTTGGAGTACAAGCTACGAAGTTATCCTGACATTGGACAAGGAGAAACACTCTATAGATGGACCAATATACTACTATGTGTTCAATACTCTCCTATTCTGCTTACTTGTGCTTCACATTTTCTGGTGGGTGTTGATTTATCGGATGCTTGTTAAACAAATCCAAGCAAGAGGCCAGCTTAGTGAGGATGTTCGGTCAGATTCTGAAGGTGAAGAAGATGATCACGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

310

Amino Acids

36.59

Weight (kDa)

5.93

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	74 - 280	1.2e-48	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	534
AciI	CCGC	4 cut(s)	11, 151, 532, 614
AclWI	GGATC	1 cut(s)	668
AcoI	YGGCCR	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	921
AfaI	GTAC	2 cut(s)	17, 706
AfiI	CCNNNNNNNGG	2 cut(s)	462, 730
AgsI	TTSAA	4 cut(s)	226, 373, 379, 781
AjnI	CCWGG	2 cut(s)	334, 342
AluBI	AGCT	4 cut(s)	554, 630, 711, 874
AluI	AGCT	4 cut(s)	554, 630, 711, 874
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	668
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	3 cut(s)	350, 475, 868
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	332, 475, 694, 758
AsuHPI	GGTGA	1 cut(s)	917
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	3 cut(s)	332, 694, 758
BalI	TGGCCA	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	486, 749
BciT130I	CCWGG	2 cut(s)	336, 344
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	3 cut(s)	272, 567, 627
BfmI	CTRYAG	1 cut(s)	750
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	336, 344
Bme18I	GGWCC	3 cut(s)	332, 694, 758
BmgT120I	GGNCC	4 cut(s)	332, 475, 694, 758
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	336, 344
BmsI	GCATC	2 cut(s)	553, 831
BmtI	GCTAGC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpuEI	CTTGAG	2 cut(s)	40, 602
Bsa29I	ATCGAT	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	299, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 730
BseBI	CCWGG	2 cut(s)	336, 344
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	299, 471
BseGI	GGATG	3 cut(s)	190, 846, 889
BseLI	CCNNNNNNNGG	2 cut(s)	462, 730
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	352, 477, 870
BshVI	ATCGAT	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	462, 730
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	352, 477, 870
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	660, 916
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	4 cut(s)	11, 151, 532, 614
BspANI	GGCC	3 cut(s)	352, 477, 870
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	695
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	1 cut(s)	668
BspQI	GCTCTTC	2 cut(s)	288, 561
BspTNI	GGTCTC	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	299, 471
BssMI	GATC	2 cut(s)	660, 916
BssT1I	CCWWGG	2 cut(s)	299, 471
Bst2UI	CCWGG	2 cut(s)	336, 344
Bst4CI	ACNGT	3 cut(s)	106, 493, 608
Bst6I	CTCTTC	2 cut(s)	288, 561
BstC8I	GCNNGC	3 cut(s)	532, 628, 872
BstDEI	CTNAG	1 cut(s)	875
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	190, 846, 889
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	663, 919
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	660, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 632
BstNI	CCWGG	2 cut(s)	336, 344
BstSCI	CCNGG	2 cut(s)	334, 342
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	352, 477, 870
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	3 cut(s)	190, 846, 889
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	532, 628, 872
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	332, 475, 694, 758
ClaI	ATCGAT	1 cut(s)	30
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	16, 705
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	4 cut(s)	237, 472, 482, 560
CviQI	GTAC	2 cut(s)	16, 705
DdeI	CTNAG	1 cut(s)	875
DpnI	GATC	2 cut(s)	662, 918
DpnII	GATC	2 cut(s)	660, 916
EaeI	YGGCCR	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	288, 561
EarI	CTCTTC	2 cut(s)	288, 561
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	299, 471
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	332, 694, 758
Eco57I	CTGAAG	1 cut(s)	921
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	334, 342
EcoT14I	CCWWGG	2 cut(s)	299, 471
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	2 cut(s)	299, 471
FaeI	CATG	4 cut(s)	240, 475, 485, 563
FatI	CATG	4 cut(s)	236, 471, 481, 559
FauI	CCCGC	1 cut(s)	539
FauNDI	CATATG	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	3 cut(s)	197, 853, 896
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	3 cut(s)	272, 567, 627
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	352, 477, 870
Hin1II	CATG	4 cut(s)	240, 475, 485, 563
HinfI	GANTC	4 cut(s)	126, 230, 672, 896
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	6 cut(s)	110, 177, 457, 840, 895, 901
Hpy188III	TCNNGA	5 cut(s)	119, 560, 581, 724, 920
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	373, 896
HpyCH4III	ACNGT	3 cut(s)	106, 493, 608
HpyCH4V	TGCA	2 cut(s)	246, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 632
HpyF3I	CTNAG	1 cut(s)	875
Hsp92II	CATG	4 cut(s)	240, 475, 485, 563
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	660, 916
LguI	GCTCTTC	2 cut(s)	288, 561
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	553, 831
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	3 cut(s)	272, 567, 627
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	662, 918
MboI	GATC	2 cut(s)	660, 916
MboII	GAAGA	9 cut(s)	68, 74, 220, 223, 305, 548, 604, 920, 923
MlsI	TGGCCA	1 cut(s)	352
MluCI	AATT	5 cut(s)	72, 140, 156, 221, 374
MluNI	TGGCCA	1 cut(s)	352
MlyI	GAGTC	2 cut(s)	239, 666
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	9 cut(s)	15, 31, 34, 101, 141, 287, 577, 860, 874
Mox20I	TGGCCA	1 cut(s)	352
Mph1103I	ATGCAT	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	352
MseI	TTAA	3 cut(s)	155, 849, 928
MslI	CAYNNNNRTG	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	336, 344
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	336, 344
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	53, 632
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	2 cut(s)	660, 916
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	4 cut(s)	240, 475, 485, 563
NlaIV	GGNNCC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	248
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	2 cut(s)	288, 561
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	126, 896
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	2 cut(s)	238, 666
PpsI	GAGTC	2 cut(s)	238, 666
PpuMI	RGGWCCY	1 cut(s)	694
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	334, 342
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	334, 342
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	4 cut(s)	332, 475, 694, 758
PspPPI	RGGWCCY	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	899
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	17, 706
RsaNI	GTAC	2 cut(s)	16, 705
RseI	CAYNNNNRTG	1 cut(s)	241
SapI	GCTCTTC	2 cut(s)	288, 561
SaqAI	TTAA	3 cut(s)	155, 849, 928
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	660, 916
Sau96I	GGNCC	4 cut(s)	332, 475, 694, 758
ScaI	AGTACT	1 cut(s)	17
SchI	GAGTC	2 cut(s)	239, 666
ScrFI	CCNGG	2 cut(s)	336, 344
SetI	ASST	9 cut(s)	348, 527, 541, 556, 588, 632, 713, 876, 907
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	553, 831
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	3 cut(s)	332, 694, 758
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	19, 581
SmoI	CTYRAG	2 cut(s)	19, 581
Sse9I	AATT	5 cut(s)	72, 140, 156, 221, 374
SsiI	CCGC	4 cut(s)	11, 151, 532, 614
SspMI	CTAG	3 cut(s)	272, 567, 627
StyD4I	CCNGG	2 cut(s)	334, 342
StyI	CCWWGG	2 cut(s)	299, 471
TaaI	ACNGT	3 cut(s)	106, 493, 608
TaqI	TCGA	1 cut(s)	30
TaqII	GACCGA	1 cut(s)	879
TasI	AATT	5 cut(s)	72, 140, 156, 221, 374
TatI	WGTACW	2 cut(s)	15, 704
TfiI	GAWTC	2 cut(s)	126, 896
Tru1I	TTAA	3 cut(s)	155, 849, 928
Tru9I	TTAA	3 cut(s)	155, 849, 928
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	4 cut(s)	75, 213, 380, 548
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	332, 694, 758
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	3 cut(s)	272, 567, 627
ZrmI	AGTACT	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.